Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3418 486 6e-133 seq3417 188 2e-43 seq2653 172 2e-38 seq2647 150 5e-32 >seq3418 Length=161897 Score = 486 bits (538), Expect = 6e-133 Identities = 704/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 577 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 636 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 637 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGAT 696 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||| |||||||| |||||||| |||| |||||| | || || | | Sbjct 697 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 756 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | ||||| ||| || ||| Sbjct 757 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 816 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 817 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 876 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | || || | | ||||| ||||| Sbjct 877 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 936 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| || | || ||||| || Sbjct 937 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 996 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || |||||| ||||||||||| || || || || || || |||||||| Sbjct 997 CCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 1056 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| || || |||||||||||||| || |||||||| |||||| |||||| || || Sbjct 1057 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 1116 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || || | ||||| |||||| ||| || | | || |||| ||||||||| Sbjct 1117 CCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAACA 1176 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || || Sbjct 1177 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1236 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| |||| ||| || ||||| ||||||| ||| Sbjct 1237 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCAT 1296 Query 26597 TCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || |||||||| |||| || || || ||| | Sbjct 1297 TCATCAACGGATGCC-GCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAGAAGT 1355 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | | || || ||||| || || Sbjct 1356 CGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAGGTTC 1415 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | || Sbjct 1416 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAG 1474 Query 26775 TGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 | || | | | ||| |||| ||||| | || || |||||||| | || |||||||| Sbjct 1475 TTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 1533 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | ||| || Sbjct 1534 TCAGTGCTGGTTATCCAGTTACAGAA 1559 >seq3417 Length=265768 Score = 188 bits (208), Expect = 2e-43 Identities = 230/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 155895 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 155954 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | ||| ||||| || Sbjct 155955 GCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTATCAACTACGGAT 156014 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||||||||||| |||||||| |||| |||||| | || || | | Sbjct 156015 TGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 156074 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | ||||| ||| || ||| Sbjct 156075 CAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 156134 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || ||||| || |||||||| || Sbjct 156135 CTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTATAAGTT 156194 Query 26177 TCTTCATCTTGCCC 26190 | ||| ||||| || Sbjct 156195 TATTCCTCTTGACC 156208 >seq2653 Length=4899193 Score = 172 bits (190), Expect = 2e-38 Identities = 272/387 (70%), Gaps = 11/387 (3%) Strand=Plus/Minus Query 26107 GTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAAT 26166 ||| || ||||| ||||| ||||| || |||| ||||| || || || ||||| || || Sbjct 3225818 GTTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGAT 3225759 Query 26167 ATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGT 26226 |||||| || ||||| ||||| || || | || || | || | | | ||||| Sbjct 3225758 ATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGT 3225699 Query 26227 CGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCC 26286 ||||| || | ||||| ||||| || ||||||||| ||| || | || Sbjct 3225698 GGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCC 3225639 Query 26287 ACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTA----TGTT 26342 ||||| || ||||| || || |||||| ||||||||||| || | |||| |||| Sbjct 3225638 GCCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAA-ATTAAGAATGTT 3225580 Query 26343 CTGCTT-----GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCC 26397 ||||| ||||||| | ||| || || |||||||||||||| || |||||||| || Sbjct 3225579 GTGCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACC 3225521 Query 26398 ATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAG 26457 |||| |||||| || || |||| || || | ||||| |||||| ||| || | | Sbjct 3225520 ATCAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAAC 3225461 Query 26458 TGGTGCTGTATATGCAACAAATATCCA 26484 || |||| ||||||||| ||||| Sbjct 3225460 AGGAGCTGAGTATGCAACAGCAATCCA 3225434 >seq2647 Length=4788780 Score = 150 bits (166), Expect = 5e-32 Identities = 279/407 (69%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 26033 GTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAA 26092 |||| |||||| | || || | ||| || || | || |||||| ||| | ||||| Sbjct 734076 GTGCTGATACCTAAAGCAGTGAACCAGATACCTGCTACAAGCCAAGCAGCTAAGAAGAAG 734135 Query 26093 TGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCG 26152 || | ||||| ||| || ||||| ||||| | || || |||| ||||| || || Sbjct 734136 TGTAACGAACGAGAGTTGTTGAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCA 734195 Query 26153 TGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGT 26212 || || | || |||||||| | ||||| ||||| || || || || || | || Sbjct 734196 TGAACAACTACGATATTATAAGG-TCTTCCTCTTGACCGAATTTGTAACCTTCGTTAGCA 734254 Query 26213 GAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCA 26272 || | | | | | ||||| || | ||| | ||||| || |||||| || Sbjct 734255 GATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTACCAAGGAACCATGCATAACA 734314 Query 26273 GCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGT 26332 ||| || | || ||||| || | ||| || || |||||||||||||||||| || Sbjct 734315 CTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATCATATGGAATGGGTGCATAAGA 734374 Query 26333 ATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGC 26392 || || || || | |||||||| | ||| || || ||||||| |||||| || |||||| Sbjct 734375 ATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAAGTACTAGAGATTCCTAGAGGC 734434 Query 26393 ATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACAC 26439 || |||||| |||||| || || |||| || || | |||||| || Sbjct 734435 ATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGA-TAAGAAAAC 734480 Score = 102 bits (112), Expect = 2e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || |||||| ||||||||| || ||||||||||| | || |||||| Sbjct 733599 GCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 733658 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || |||| | | ||||||||| ||| |||| || | | ||| | ||| || Sbjct 733659 GCATGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACAGAT 733718 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGAT 26040 ||||| || || ||||| |||||||| |||||||| || | ||| Sbjct 733719 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTACTGAT 733762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147706004554560