Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq3418 580 1e-160 seq2653 212 7e-50 seq1564 210 3e-49 seq3417 194 2e-44 seq2647 194 2e-44 >seq3418 Length=161897 Score = 580 bits (642), Expect = 1e-160 Identities = 710/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | Sbjct 1537 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCG 1478 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 1477 CAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 1418 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || |||||||||||| || | | Sbjct 1417 GTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTATTATTC 1358 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 | | ||| || || ||| | ||||| || || ||||||||||| ||| | |||||| Sbjct 1357 CGACTTCTGCAGCTATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATG 1298 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| ||||| || ||||||| |||| | || | |||||| | | || | Sbjct 1297 AATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAG 1238 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 1237 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTG 1178 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 |||||||||||| || || || | ||||| ||| || ||| | | || || ||| Sbjct 1177 CTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCG 1118 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 |||| || ||| ||||||| |||||||| || |||||||||||||| || | ||| Sbjct 1117 GTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGA 1058 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || ||||| || || ||||| || ||||||||||| || || ||| | || ||||| | Sbjct 1057 TTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCATATGTTAGGCGTAGCTG 998 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| | | Sbjct 997 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGA 938 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| || || | || ||| ||| | ||||||| ||||| ||||| |||| Sbjct 937 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAG 878 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||||||||| || || ||||||||||| || || || || | |||||||| ||||| Sbjct 877 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 818 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 ||||||||||| | | ||||||||| | ||||| |||||||| || | |||| Sbjct 817 GTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCT 758 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||||| | ||| | || |||||||||||||| ||||||||||| ||||||| Sbjct 757 GGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAACGGTTTCAATTTCAACC 698 Query 155831 AGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACC 155887 | || ||||| || |||| || || || ||| ||||| || || |||||| Sbjct 697 AATCCGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACC 641 Query 155888 GCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACC 155947 | ||| |||||||||||||| ||||| || ||||| ||||| ||||||||||| |||| Sbjct 640 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 581 Query 155948 TTGCTGCT 155955 | |||||| Sbjct 580 TAGCTGCT 573 >seq2653 Length=4899193 Score = 212 bits (234), Expect = 7e-50 Identities = 281/390 (72%), Gaps = 9/390 (2%) Strand=Plus/Plus Query 155342 CTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTT 155401 ||||||| |||||||||||| || || || | ||||| ||| || ||| | | | Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCT 3225491 Query 155402 ATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTA 155461 | || ||||||| || ||| ||||||| |||||||| || |||||||||||||| | Sbjct 3225492 ACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 3225551 Query 155462 ACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTA--------TGCACCCCTTCCA 155513 | | ||| | || ||||| || | ||||| || |||| ||||||| || || Sbjct 3225552 ATTC-ATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCA 3225610 Query 155514 CATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATT 155573 ||| | || ||||| ||||| ||||| || || || ||| ||||||||| ||||| || Sbjct 3225611 TATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 3225670 Query 155574 GGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAA 155633 ||| || ||| | ||| ||||| || || | || | | ||| | ||||||| Sbjct 3225671 GGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAG 3225730 Query 155634 GTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCT 155693 ||||| ||||| |||||||||||||| || || ||||||||||| || || || || | Sbjct 3225731 ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATT 3225790 Query 155694 TATCTTCCAGTATGCATCCTTCAACAACTC 155723 ||||| || ||||| ||||||||||| Sbjct 3225791 GATCTTTCAATATGCTAGTTTCAACAACTC 3225820 >seq1564 Length=1404973 Score = 210 bits (232), Expect = 3e-49 Identities = 269/371 (73%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||||||| | | | || || | || ||| | Sbjct 141179 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATA 141120 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 |||||||||||||| ||||| ||||| |||||||||||||||||||| || |||| ||| Sbjct 141119 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 141060 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 || | || || ||||| || |||||||||||| || | || | ||| || || || Sbjct 141059 CTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAAGT 141000 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | ||||| || || ||||||||||| ||| | ||||||| ||||| ||||| || ||| Sbjct 140999 TTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGT 140940 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 155310 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 140939 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 140880 Query 155311 TGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 155370 ||||||||| || |||||| || ||||| |||||||| |||||||||||| || || Sbjct 140879 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCT 140820 Query 155371 GTATCTGCTGC 155381 || | ||||| Sbjct 140819 GTTGCAGCTGC 140809 >seq3417 Length=265768 Score = 194 bits (214), Expect = 2e-44 Identities = 237/321 (74%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 |||| ||||| ||| |||||||||| || || ||||||||| || || || || | | Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 ||||||| ||||| ||||||||||| | | ||||||||| | ||||| |||| Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 |||| || | |||||| |||||| | ||| | || |||||||||||||| || | Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCA 155874 ||| || |||||||| || ||||| || || | || || || || ||||| Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCA-AGGCCGCGTAATTAAGACTTGGGCT 155972 Query 155875 GACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 || || ||||||| ||| |||||||||||||| ||||| || ||||| ||||| ||| Sbjct 155971 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 155912 Query 155935 TTCCCTCTTGACCTTGCTGCT 155955 |||||||| ||||| |||||| Sbjct 155911 TTCCCTCTAGACCTAGCTGCT 155891 >seq2647 Length=4788780 Score = 194 bits (214), Expect = 2e-44 Identities = 285/401 (71%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| || | || || |||| || || ||| ||||||| |||||||| || | Sbjct 734482 CTGTTTTC-TTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 734424 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 ||||| ||||||| || | ||| | || ||||| | || ||||| || |||||||||| Sbjct 734423 TCTCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACC 734364 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | ||||| ||| | || ||||| |||| ||||| || || || ||| || |||||| | Sbjct 734363 CATTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATG 734304 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| | ||| | ||| | ||||| | | | || ||| ||| | | Sbjct 734303 GTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAG 734244 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 ||||||| ||||| ||||| |||| | ||||||| || || | || |||||| || || | Sbjct 734243 GTTACAAATTCGGTCAAGAGGAAG-ACCTTATAATATCGTAGTTGTTCATGGTTATTTTG 734185 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||| | ||||| ||||||||||| | | ||||||||| | | Sbjct 734184 GCCGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAG 734125 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGT 155787 |||| |||| ||| | | |||||| |||||| | ||| Sbjct 734124 CTGCTTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGT 734084 Score = 114 bits (126), Expect = 2e-20 Identities = 124/163 (76%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT--- 155850 || |||||||||||||| ||||||||||| |||||||| |||||| | || |||| Sbjct 733756 ACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGA---TAGTCAA 733700 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 || || || ||| ||||| || || |||||| ||| |||||||||||||| Sbjct 733699 GGCCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAGTT 733640 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTG 155953 ||||| || |||| |||| ||||||||||| ||||| |||| Sbjct 733639 ATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGCTG 733597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584810212916080