Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3418 535 1e-147 seq2653 197 4e-46 seq1564 196 1e-45 seq2647 183 9e-42 seq3417 158 3e-34 seq2036 89.7 1e-13 >seq3418 Length=161897 Score = 535 bits (592), Expect = 1e-147 Identities = 715/989 (72%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 573 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 632 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | ||||||||||||| ||| || || | | || ||||| Sbjct 633 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 692 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || ||||| || ||||| || |||||||| ||||| | | || Sbjct 693 GGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGT 752 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | | |||||||||| || ||| ||||| Sbjct 753 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 812 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| ||||| || ||||||||||| ||||| Sbjct 813 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 872 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | ||| |||||| |||| ||||| || Sbjct 873 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 932 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| || | | || ||||||||| || | | || || || Sbjct 933 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 992 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || ||||| | |||||| ||||||||||| ||||||||||| || || ||||| Sbjct 993 TACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 1052 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 |||| |||||| ||||| || ||| |||||||| ||||||||||||||| ||| || Sbjct 1053 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1112 Query 41069 CTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 |||||||| ||| || | ||||| || || ||| |||| | ||||||| |||||| Sbjct 1113 CTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGC 1172 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTA 41188 ||| ||||| || | |||||| || | | | ||||||||||| | ||| ||| Sbjct 1173 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1232 Query 41189 TGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 ||||| || | ||| ||||| | ||||| |||| ||| || ||||||||||||| Sbjct 1233 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAA 1292 Query 41249 CCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||| || || | | |||| |||||||| |||||||| || |||| || || || || Sbjct 1293 CCATTCATCAACGGATGCC-GCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAG 1351 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | |||||| | ||| ||||| ||||||||||| ||||| | | || || ||||| | Sbjct 1352 AAGTCGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAG 1411 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | ||||| || ||||| |||||||| || || || || || ||||| || || || ||| Sbjct 1412 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA- 1470 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | || || || | ||| | || ||||| | ||||||||||| || | ||| || ||| Sbjct 1471 GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1530 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || ||||| || | ||||||||| || Sbjct 1531 TTTTCAGTGCTGGTTATCCAGTTACAGAA 1559 >seq2653 Length=4899193 Score = 197 bits (218), Expect = 4e-46 Identities = 275/385 (71%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| |||||||||||| || | || ||||| ||||| || ||||||||||| Sbjct 3225817 TTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 3225758 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || | || ||||| || | || || | ||| ||||| |||| ||| Sbjct 3225757 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGTG 3225698 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || ||| || | ||||| || | | || ||||||||| || | | || Sbjct 3225697 GTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 3225638 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCA--------TGAGAATGTTGT 40995 || || || || || ||||| | |||||| |||||||||| | |||||||||| Sbjct 3225637 CCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTTGT 3225578 Query 40996 GTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCAT 41055 | | || ||||| |||| |||||| ||||| || ||| |||||||| ||||||||||| Sbjct 3225577 GCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACCAT 3225519 Query 41056 CAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATG 41115 |||| ||| |||||||||| ||| || | ||||| || || ||| |||| | | Sbjct 3225518 CAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAG 3225459 Query 41116 GAGCTGTGTATGCCACAAATATCCA 41140 |||||| |||||| ||| ||||| Sbjct 3225458 GAGCTGAGTATGCAACAGCAATCCA 3225434 >seq1564 Length=1404973 Score = 196 bits (216), Expect = 1e-45 Identities = 271/374 (72%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 41102 AGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTA 41161 ||| |||| | ||||||| |||||| ||| ||||| || | |||||| || | | | Sbjct 140808 AGCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAA 140867 Query 41162 TGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAAT 41221 ||||||||||| | ||| ||| ||||| || | ||| ||||| | ||||| Sbjct 140868 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 140927 Query 41222 GAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTG 41280 |||| ||| || ||||||||||||| ||| || || | | |||| |||||||| |||| Sbjct 140928 TAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC-GCTTCCCAAATTG 140986 Query 41281 GGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGT 41340 |||| || |||| | || || ||| |||||| | ||| ||||| |||||||||| Sbjct 140987 GGTAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGT 141046 Query 41341 TCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTG 41400 ||||||| | || || || ||||| || ||||| || ||||| |||||||| || || | Sbjct 141047 TCCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG 141106 Query 41401 CTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGC 41459 | || || ||||| || || || ||| | || || || | ||| | || ||||| | Sbjct 141107 CAGCAATGAAGGCTATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAA 141165 Query 41460 ACACCAAACCAACC 41473 ||||||||||| || Sbjct 141166 ACACCAAACCATCC 141179 >seq2647 Length=4788780 Score = 183 bits (202), Expect = 9e-42 Identities = 264/367 (72%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | | |||||||||| || ||| |||||||| |||||||| || || | Sbjct 734119 AAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTAGAAGATCA 734178 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || || ||||||| ||||||| || | || ||||| || | Sbjct 734179 ATCGGCCAAAATAACCATGAACAACTACGATATTATAAGG-TCTTCCTCTTGACCGAATT 734237 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTG-AGGAAGTAACA 40910 | || || | ||| |||||| ||| |||| |||| || | || || || || Sbjct 734238 TGTAACCTTCGTTAGCAGATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTACCA 734297 Query 40911 AGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATA 40970 ||| || |||||| || || | | || || || || | || ||||| | |||| Sbjct 734298 AGGAA-CCATGCATAACACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATCATA 734356 Query 40971 TGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTT 41030 |||||||||||||| ||||||||||| || | ||||| |||| |||||| ||||| || Sbjct 734357 TGGAATGGGTGCATAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAAGTA 734416 Query 41031 CCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAG 41090 | | |||||||| ||||||||||||||| ||| ||||| |||| ||| || | |||| Sbjct 734417 CTAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGA-TAAG 734475 Query 41091 AATACAG 41097 || |||| Sbjct 734476 AAAACAG 734482 Score = 91.5 bits (100), Expect = 4e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| ||||||||| ||||| |||| |||| || ||||| ||||||||||| || | Sbjct 733598 AGCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTT 733657 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 ||||| | ||||||||||||| ||| || || | | || | ||| || Sbjct 733658 AGCATGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACAGA 733717 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTA 40691 ||||| || || ||||| || ||||| || ||||||||| Sbjct 733718 TTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTA 733757 >seq3417 Length=265768 Score = 158 bits (174), Expect = 3e-34 Identities = 219/304 (72%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 155891 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 155950 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | ||||| | |||||||||||| ||| || || || || || |||| Sbjct 155951 GTTAGCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCC-TTGGCTATCAACTA 156009 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || ||||||| ||||| || |||||||| ||||| | | | Sbjct 156010 CGGATTGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAG 156069 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | | |||||||||| || ||| |||| Sbjct 156070 TGAACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGT 156129 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || || | || ||||| ||| || ||||||||||| |||| Sbjct 156130 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTAT 156189 Query 40828 AAGT 40831 |||| Sbjct 156190 AAGT 156193 >seq2036 Length=7432206 Score = 89.7 bits (98), Expect = 1e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | || ||| | || || || || || || |||||||| ||| Sbjct 2690447 CCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGAAAT 2690506 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||| | ||||||||||| | || ||||| |||| |||||| ||||| ||| | Sbjct 2690507 GGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGTTTTAAAT 2690566 Query 41037 ATTCCTAAAGGCATACCAT 41055 || | |||||||||||| Sbjct 2690567 TTTTTTGAAGGCATACCAT 2690585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143696567299212