Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq3418 614 6e-171 seq2653 248 1e-60 seq2647 230 3e-55 seq3417 214 2e-50 seq1564 188 8e-43 seq2036 111 2e-19 >seq3418 Length=161897 Score = 614 bits (680), Expect = 6e-171 Identities = 729/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 573 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 632 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||||||| ||| || || ||| ||||| Sbjct 633 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAAC 689 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 |||||||||||||| ||||||||||| ||||||||||||||||| | ||| | || Sbjct 690 TACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGC 749 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| | ||||||||| | | ||||| Sbjct 750 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTT 809 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || ||||||||||| || || || Sbjct 810 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATT 869 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | ||| || || | || || || Sbjct 870 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGT 929 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| ||||||||||| || || || || || Sbjct 930 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 989 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | |||||| |||||||||||||| ||||||||||| || || Sbjct 990 GAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTG 1049 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| | || ||||||||||| || || |||||||| | ||||| ||| Sbjct 1050 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1109 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 || ||||||| || |||| |||||| || ||| || || | || ||||| ||||| Sbjct 1110 TCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTA 1169 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 1170 TGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1229 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | |||| |||| || || || || Sbjct 1230 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTA 1289 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||| |||||||| || || || ||||| | ||| || || Sbjct 1290 TAACCATTCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGC 1349 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| | |||| || ||||||||| || || ||||| ||||| | || || || | ||| Sbjct 1350 AGAAGTCGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAAC 1409 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| || || || || Sbjct 1410 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATAC 1469 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314 || | ||| | | || ||| |||||||| ||||| ||||| |||| || | || Sbjct 1470 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 1529 Query 68315 ATTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| | ||||||||| Sbjct 1530 GTTTTCAGTGCTGGTTATCCAGTTACA 1556 >seq2653 Length=4899193 Score = 248 bits (274), Expect = 1e-60 Identities = 289/390 (74%), Gaps = 9/390 (2%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| || |||||||| || || || || ||||||||||| || Sbjct 3225820 GAGTTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 3225761 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | ||| | || | || Sbjct 3225760 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCT 3225701 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| |||| | | |||||| || | ||||| ||||||||||| || || || Sbjct 3225700 GTGGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 3225641 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCA--------TAAGGATGT 67821 || ||||||||||| ||||| || | |||||| |||||||||| |||| |||| Sbjct 3225640 CCGCCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGT 3225581 Query 67822 TGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTG 67881 |||||| || ||||| || | |||| | || ||||||||||| || || |||||||| Sbjct 3225580 TGTGCTTAGCCTGGAATACAATCATG-AATTGAAAGTACCAGAGATTCCTAGAGGCATAC 3225522 Query 67882 CGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACA 67941 | ||||| ||| || ||||||| || |||| |||||| || ||| || || | | Sbjct 3225521 CATCAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAA 3225462 Query 67942 CTGGAGCAGAGTATGCTACACAGATCCAAG 67971 | ||||| |||||||| ||| ||||||| Sbjct 3225461 CAGGAGCTGAGTATGCAACAGCAATCCAAG 3225432 >seq2647 Length=4788780 Score = 230 bits (254), Expect = 3e-55 Identities = 289/394 (73%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 |||||||||||||| | | ||| | | ||||| | ||||||||| | | ||| Sbjct 734091 GCAGTGAACCAGATACCTGCTACAAGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAG 734150 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 ||||||||| ||||| | ||||||||| || || || || |||||| || | || || Sbjct 734151 TTGTTGAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCATGAACAACTACGATA 734210 Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 || |||| ||||| ||||| ||||| |||||||| | ||| || || | | | Sbjct 734211 TTATAAGG-TCTTCCTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTCATTTTTTTTG 734269 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| ||||| | | |||| | || | ||||| |||||| |||| || || || || Sbjct 734270 GTTTCCCTGATCAAACTAGAAATTACCAAGGAACCATGCATAACACTGAATAGGGAGCCG 734329 Query 67773 CCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCT 67832 |||||||||| ||||| || | ||||||||||||||||||||| ||||||||||| | Sbjct 734330 CCGAATACACTAGCTACGCCTATCATATGGAATGGGTGCATAAGAATGTTGTGCTCAACC 734389 Query 67833 TGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 ||||| || | |||| | || ||||||| ||| || || |||||||| | ||||| ||| Sbjct 734390 TGGAATACAATCATGAAATTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAA 734449 Query 67893 GAACCTTGACCGAAAGGATAGACCAAGAACACAG 67926 || || |||| || |||| ||||| |||| Sbjct 734450 CTTCCCTGGCCGATTGGGTAGA-TAAGAAAACAG 734482 Score = 120 bits (132), Expect = 3e-22 Identities = 125/163 (77%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 67360 CAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTC 67419 |||| ||||| ||||||||||| |||| |||| || |||||||||||||| ||||| Sbjct 733597 CAGCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGT 733656 Query 67420 CTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACGA 67476 || ||||| ||| || ||||||||| ||| || || ||| |||| | Sbjct 733657 TAGCATGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAATTA 733713 Query 67477 CGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 | ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 733714 CAGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGT 733756 >seq3417 Length=265768 Score = 214 bits (236), Expect = 2e-50 Identities = 242/323 (75%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 155891 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 155950 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || |||||||| ||| || | ||| | ||||| Sbjct 155951 GTTAGCACGGTTAATGATATCAGCCCAAGTCTTAATTACG---CGGCCTTGGCTATCAAC 156007 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 |||||||||||||| || |||| || ||||||||||||||||| | ||| | || Sbjct 156008 TACGGATTGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGC 156067 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| | ||||||||| | | ||||| Sbjct 156068 AGTGAACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTT 156127 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || ||||||||| || || || Sbjct 156128 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATT 156187 Query 67655 GTAAGTCTCTTCTTCTTGTCCGA 67677 ||||| | ||| ||||| |||| Sbjct 156188 ATAAGTTTATTCCTCTTGACCGA 156210 >seq1564 Length=1404973 Score = 188 bits (208), Expect = 8e-43 Identities = 266/373 (71%), Gaps = 3/373 (1%) Strand=Plus/Plus Query 67932 GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAA 67991 |||||| || ||||| |||||||| ||| |||||||| |||||||| |||||| || Sbjct 140812 GCTGCA---ACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 140868 Query 67992 GAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACA 68051 ||||||||||| |||||| ||| | | || | | |||||| | || | Sbjct 140869 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 140928 Query 68052 AGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGA 68111 |||| |||| || || || || ||||| ||||| | | ||| |||||||| || || Sbjct 140929 AGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAAATTGGG 140988 Query 68112 TAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68171 || ||||| | || || || ||| | |||| || ||||||||| || || ||||| Sbjct 140989 TAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTC 141048 Query 68172 CCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCT 68231 ||||| | || || || | ||||||||| | |||||||| ||||| |||||||| || Sbjct 141049 CCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 141108 Query 68232 GCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACA 68291 |||||||| || || || || || | ||| | | || ||| |||||||| ||| Sbjct 141109 GCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 141168 Query 68292 CCGAACCAACCAA 68304 || ||||| |||| Sbjct 141169 CCAAACCATCCAA 141181 >seq2036 Length=7432206 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 67743 GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGG 67802 ||||| ||||||||||| || || | ||| |||||||||| ||||| || |||||||| Sbjct 2690444 GAACCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGA 2690503 Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGT 67858 ||||||||| |||| |||||||||| || ||||| || | |||| | || ||||| Sbjct 2690504 AATGGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGT 2690559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566922977180880