Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1361 140 6e-28 seq268 127 4e-24 seq1421 95.1 2e-14 seq1576 91.5 3e-13 seq813 84.2 4e-11 >seq1361 Length=2134540 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| || || || | |||| ||| || ||||||||||| Sbjct 1709519 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTTTGGATATTATAGTCT 1709460 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| |||||||| | || ||||||||| ||| Sbjct 1709459 GCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCAAAAATCAGTCGCTGTTGATCTGGA 1709400 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | || | ||| ||| ||||||||| |||| Sbjct 1709399 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTAACATTATCAATGGTATCGGAACTCTCA 1709340 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || |||||||| || ||||| Sbjct 1709339 ACCTCAAGAGTAATAGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 1709290 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| || || || | |||| ||| || ||||| ||||| Sbjct 1709747 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 1709688 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| |||||||| | |||||||||||| ||| Sbjct 1709687 GCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 1709628 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || || | |||| ||| ||| ||||| || |||| Sbjct 1709627 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1709568 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| ||||| ||||| || ||||| Sbjct 1709567 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709518 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| || || || | |||| ||| || ||||| ||||| Sbjct 1709975 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 1709916 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| |||||||| | |||||||||||| ||| Sbjct 1709915 GCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 1709856 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || || | |||| ||| ||| ||||| || |||| Sbjct 1709855 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1709796 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| ||||| ||||| || ||||| Sbjct 1709795 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709746 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || ||||| | || | |||||| || || ||||| Sbjct 1710203 ATGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCT 1710144 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| ||||| || | |||||||| |||||| Sbjct 1710143 GCAAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAATATAAGCCTCTGTTGGTCAGGA 1710084 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | |||| ||| ||| ||||| || |||| Sbjct 1710083 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1710024 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| ||||| ||||| || ||||| Sbjct 1710023 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709974 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || ||||| | || | |||||| || || ||||| Sbjct 1710431 ATGCCACCACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCT 1710372 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || |||||||||||||| | ||||||||||| || Sbjct 1710371 GCAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAGCCTCTGTTGATCTGGG 1710312 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | ||| ||| ||||| || |||| Sbjct 1710311 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCA 1710252 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || ||||| ||||| || ||||| Sbjct 1710251 ACTTCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1710202 >seq268 Length=6919517 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || | || |||||||||| || | ||||| ||||| || ||| Sbjct 3332037 ATACCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCG 3332096 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | ||||| || || ||||| || ||||| ||||| ||| Sbjct 3332097 GCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGA 3332156 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||||||||| || || || | || | || ||| ||||| || ||| Sbjct 3332157 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCA 3332216 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || |||||||| || || || ||||| || || |||||||| Sbjct 3332217 ACTTCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCAT 3332266 >seq1421 Length=9127415 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 193120 AAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 ||| |||| | | ||| || | | || || || ||||||| |||| ||| || | Sbjct 1342480 AAGCAATTCAGAAACCCCCACGGAGACGGAGGACAAGATGCAGAGTAGACTCCTTCTGGA 1342539 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 | |||||||||| | || || ||| || | |||||||||||||| || || |||| Sbjct 1342540 TGTTATAGTCGGCCAGAGTCCTTCCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCT 1342599 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 | ||||| || || || || || || ||||| ||||| | || | || ||| || | Sbjct 1342600 GCTGATCCGGTGGAATCCCCTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTGT 1342659 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 |||| || || || || || ||||| || || || || || || || || || |||| Sbjct 1342660 CGGAGCTTTCCACCTCCAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCA 1342719 Query 193360 TT 193361 || Sbjct 1342720 TT 1342721 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || |||||||| || |||| ||| | || | ||| || ||||| |||||| Sbjct 1342947 ATACCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCG 1343006 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || | || |||||||| || || | ||||| || || || Sbjct 1343007 GCTAGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGG 1343066 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || || || | ||| | || ||| || ||||| ||| Sbjct 1343067 GGGATTCCTTCTTTGTCCTGGATCTTAGCTTTCACGTTGTCAATTGTGTCGGAGCTTTCA 1343126 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || ||||| || || || || || || || || || ||||| Sbjct 1343127 ACCTCCAAGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1343176 >seq1576 Length=5940209 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| || || |||| ||| | |||| ||| || || || || ||| Sbjct 2985777 ATCCCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCG 2985836 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| ||||| || | ||||| ||||| || Sbjct 2985837 GCCAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGG 2985896 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | ||| |||||| ||||| || Sbjct 2985897 GGGATTCCTTCTTTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTGTCGGAGCTTTCC 2985956 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || ||||| || ||||| Sbjct 2985957 ACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||||||| || || || ||||| | || | ||| || || || Sbjct 907439 ATTTGCATGCCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTG 907380 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | || || | ||||||||||| || || | ||||| || Sbjct 907379 TAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGG 907320 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || |||| || | || ||| || ||||| Sbjct 907319 TCCGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAG 907260 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || || || || ||||| || || || || || ||||| Sbjct 907259 CTCTCCACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTCTTGACGAAGATCTGCAT 907204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899615962265760