Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq268 120 4e-22 seq1830 86.0 9e-12 seq1361 84.2 3e-11 >seq268 Length=6919517 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||||| |||||||| || ||||||| ||| || Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| || || || ||||||||||| || ||||| || || Sbjct 3332206 GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 3332147 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| || ||||| |||||||| ||| | |||| || | ||||| ||| Sbjct 3332146 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 3332087 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | ||||| ||| Sbjct 3332086 ATCCAGAAAGAATCAACGCTGCAT 3332063 >seq1830 Length=882674 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || | || || || || ||||| ||||| || || Sbjct 346878 ATGCAGATCTTTGTCAAGACCTTAATAGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 346819 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| ||| || || || || || |||||||| || ||||| || Sbjct 346818 GATACAATTGACAACGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 346759 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || ||||||||||| ||| || || | |||| || || Sbjct 346758 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTTGCAGACTACAAC 346699 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || | || ||| | || || ||||| ||| Sbjct 346698 ATTTAAAAGGAGTCAACACTCCATTTGGTG 346669 >seq1361 Length=2134540 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| || || || ||| | || || || || Sbjct 1709974 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 1710033 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||| || |||||||||||||| || ||||| || ||| Sbjct 1710034 GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 1710093 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||||| |||||| | | ||| | |||| || || Sbjct 1710094 CAGAGGCTTATATTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAAC 1710153 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || || ||| Sbjct 1710154 ATCCAAAAAGAGTCCACCCTCCAT 1710177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731840730768800