Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1361 122 2e-22 seq1576 105 1e-17 seq268 96.9 7e-15 >seq1361 Length=2134540 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | |||| ||| || |||||| || || Sbjct 1709747 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 1709688 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| ||||||| | || || |||||||| || | |||||||||||| || Sbjct 1709687 GCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 1709628 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| |||||||| || | |||||| || Sbjct 1709627 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1709568 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||||| ||||| | ||| |||||||| Sbjct 1709567 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709518 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | |||| ||| || |||||| || || Sbjct 1709975 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 1709916 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| ||||||| | || || |||||||| || | |||||||||||| || Sbjct 1709915 GCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 1709856 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| |||||||| || | |||||| || Sbjct 1709855 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1709796 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||||| ||||| | ||| |||||||| Sbjct 1709795 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709746 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | || | |||||| ||| || || || Sbjct 1710203 ATGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCT 1710144 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || |||||||| || | |||||||| ||||| Sbjct 1710143 GCAAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAATATAAGCCTCTGTTGGTCAGGA 1710084 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || ||| |||||||| || | |||||| || Sbjct 1710083 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1710024 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||||| ||||| | ||| |||||||| Sbjct 1710023 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709974 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || | ||| | || | |||||| ||| || || || Sbjct 1710431 ATGCCACCACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCT 1710372 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || || ||||| || | ||||||||||| || Sbjct 1710371 GCAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAGCCTCTGTTGATCTGGG 1710312 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| || ||||| || | ||| || || Sbjct 1710311 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCA 1710252 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || ||||| | ||||| | ||| |||||||| Sbjct 1710251 ACTTCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1710202 >seq1576 Length=5940209 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | || | |||||| ||| |||||||||| Sbjct 2985551 ACCACCACGGAGACGGAGAACAAGGTGCAGGGTGGACTCTTTCTGGATGTTATAATCAGC 2985610 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | | |||| ||||| || || ||||||||||| || ||||| || || ||||| Sbjct 2985611 CAGAGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 2985670 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || || ||||| |||| ||| || ||| || Sbjct 2985671 GATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATAGTATCAGAGCTTTCCAC 2985730 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||||||||| || ||||| | || || | ||| |||||||| Sbjct 2985731 CTCCAAAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAAAATCTGCAT 2985778 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || | ||| | || ||||| | |||| ||| || ||| || ||||| Sbjct 2985777 ATCCCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCG 2985836 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || ||||||||||| | ||||| ||||| || Sbjct 2985837 GCCAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGG 2985896 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || ||||| || ||||| |||| || || ||| Sbjct 2985897 GGGATTCCTTCTTTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTGTCGGAGCTTTCC 2985956 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || || | || || | ||| |||||||| Sbjct 2985957 ACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 >seq268 Length=6919517 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| |||||| ||||| | || ||||| |||| || | |||||||| || || Sbjct 3332076 TCTTTCTGGATATTGTAATCGGCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAA 3332135 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || || ||||| ||||| || || |||||||||||||| || || || || || || Sbjct 3332136 ATCAACCTCTGCTGATCGGGAGGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTC 3332195 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | ||| || ||| |||||||| || || ||||| ||||| | ||||| | Sbjct 3332196 TCAATTGTATCCGAGCTTTCAACTTCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACG 3332255 Query 192526 AATATCTGCAT 192536 || || ||||| Sbjct 3332256 AAGATTTGCAT 3332266 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | || || ||| || ||||| | Sbjct 3331811 ACCACCGCGAAGACGGAGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 3331870 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | ||||| || || || || || | ||| || || || || Sbjct 3331871 TAGGGTGCGCCCATCCTCGAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCTGGAGG 3331930 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| ||||| || |||||| || | ||| || || || Sbjct 3331931 AATGCCTTCCTTGTCTTGGATTTTCGCCTTGACATTATCAATTGTATCGGAGCTCTCCAC 3331990 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || ||||||||||| || | ||||||||||| Sbjct 3331991 CTCCAGAGTGATTGTCTTCCCAGTTAATGTCTTCACGAATATCTGCAT 3332038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984436886544300