Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1361 113 8e-20 seq268 95.1 2e-14 seq302 84.2 4e-11 >seq1361 Length=2134540 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | || | |||| ||| || ||||| || ||| Sbjct 1709747 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 1709688 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | ||||| | || || ||||||||||| | ||||||||| || || Sbjct 1709687 GCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 1709628 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || ||| |||||||| || |||||||| || Sbjct 1709627 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1709568 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||||| ||||| | || |||||||| Sbjct 1709567 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709518 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | || | |||| ||| || ||||| || ||| Sbjct 1709975 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 1709916 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | ||||| | || || ||||||||||| | ||||||||| || || Sbjct 1709915 GCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 1709856 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || ||| |||||||| || |||||||| || Sbjct 1709855 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 1709796 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||||| ||||| | || |||||||| Sbjct 1709795 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709746 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| || | |||||||||||||| || ||||||||||||||||| || Sbjct 1710119 TGCTTTCCAGCAAATATAAGCCTCTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATC 1710060 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| |||||||| || |||||||| || || || || || ||||| || ||| Sbjct 1710059 TTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGTGTGATGGTCTTGCCA 1710000 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| | || |||||||| Sbjct 1709999 GTTAGAGTTTTCACAAAGATCTGCAT 1709974 >seq268 Length=6919517 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | || | ||| | || || | |||||||| || ||||| || ||| Sbjct 3332085 ATATTGTAATCGGCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTC 3332144 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || |||||||||||||| || || || || || || || ||| Sbjct 3332145 TGCTGATCGGGAGGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTA 3332204 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| |||||||| || || ||||| ||||| | ||||| | ||| || ||| Sbjct 3332205 TCCGAGCTTTCAACTTCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGC 3332264 Query 172068 AT 172069 || Sbjct 3332265 AT 3332266 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| || || ||||| || | ||| ||||| || || || ||||| || ||||| ||| Sbjct 3331893 TGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATT 3331952 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || ||||| || || || || ||||| || || || ||| Sbjct 3331953 TTCGCCTTGACATTATCAATTGTATCGGAGCTCTCCACCTCCAGAGTGATTGTCTTCCCA 3332012 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || | |||||||||||| Sbjct 3332013 GTTAATGTCTTCACGAATATCTGCAT 3332038 >seq302 Length=4569211 Score = 84.2 bits (92), Expect = 4e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| |||||| || || || || | || | || |||| |||| || || || Sbjct 222432 AGTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTCCAGCTGCTTTCC 222491 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 || || || | | ||| ||||||||||| ||||| || || ||||| ||||| || Sbjct 222492 GGCGAAGATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTT 222551 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 ||||| || || || || ||||| || || || || ||||| || || || | || Sbjct 222552 CACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCTTCCCCGTCAGGGT 222611 Query 172052 TTTAATGAATATCTGCATTTT 172072 ||| | ||| |||||||| || Sbjct 222612 TTTCACGAAGATCTGCATCTT 222632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905097328064400