Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq179 199 5e-45 seq672 104 3e-16 seq1421 91.5 2e-12 seq2926 86.0 8e-11 >seq179 Length=2504955 Score = 199 bits (220), Expect = 5e-45 Identities = 225/296 (76%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||||||||| |||||||| || | | |||| || || ||| Sbjct 2366731 GAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAACCTGG 2366790 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||||||||| ||||| || ||||| |||||||||||| |||||| ||| Sbjct 2366791 ACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAAA 2366850 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || | |||||| |||||||| ||||||| | | || | |||| | |||| Sbjct 2366851 AAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCACT-GACG 2366909 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || ||| || |||||||| || ||||||| || || |||| || ||||| Sbjct 2366910 GAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACGCGACGGCTTTCTTGTA 2366969 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926 ||||||||| | |||| |||| || ||||| | ||| ||||||| || ||| Sbjct 2366970 CATCTCCCAGATTTGCGGGTACTCAATCGGGAACA-TACAGAAGCGGTCCGGATTG 2367024 >seq672 Length=1896293 Score = 104 bits (114), Expect = 3e-16 Identities = 181/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 869636 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACC 869695 ||||| ||||| |||| | ||| ||| || ||||| || | | |||| | | | |||| Sbjct 1273292 TGGATATTCTCAATGGAGGTCTAGAATCCATAAAATGCACGCGCCTCCGTAATCTAGACC 1273351 Query 869696 TCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAA 869755 |||||||| ||||| || || || ||||| |||||| ||||| |||||| ||||| Sbjct 1273352 TCCTTCATCAACCGTCCAGCAAGATTCTCCAAAACGATGTCGTCGGAGGCGGCAAAAAAG 1273411 Query 869756 GCCAGGACGTGCTTGATAAAGTG--GCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGG 869813 || || ||||| || |||||||| | | || | | || | |||| | ||||| Sbjct 1273412 GCAAGTACGTGTTTAATAAAGTGTTTCAATTCTCAGAGGTTAGGGCTTCCCACT-GACGG 1273470 Query 869814 TG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || ||| || |||||||| | ||||||| || || | || || || ||| Sbjct 1273471 AGATCCTGAGAGAGATCGACCTCCTCCACCGTCCAGAAAGACGCAACAGCTTTCTTATAC 1273530 Query 869873 ATCTCCCATACTTGCTGGTA 869892 ||| |||| | |||| |||| Sbjct 1273531 ATCACCCAGATTTGCGGGTA 1273550 >seq1421 Length=9127415 Score = 91.5 bits (100), Expect = 2e-12 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| | | | || |||||||||||||||||||||||| | | ||| ||| Sbjct 7230264 GCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGATCTCGCGGGAGGTGATGGTG 7230205 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTC 1254466 |||||| || | || ||||| ||||| || | || |||| || || Sbjct 7230204 GGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTC-CTGAGCAAGCTTCTCGAAAATATC 7230146 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 ||||| || |||||||| | ||| | |||| | ||||| || | ||| || ||||| Sbjct 7230145 GTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTAGAGATTCCAATGTCCGGATGCAC 7230086 Query 1254527 CTGCTTGAGCACCTTGTAGATG 1254548 ||||| ||||||||| ||||| Sbjct 7230085 TTGCTTCAGCACCTTGAAGATG 7230064 Score = 87.8 bits (96), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| | | | || ||| |||||||||||||||||||| | | ||| ||| Sbjct 7233574 GCCAATTCTCCGGGAAGAACCAAGCGGACGGCGGTCTGGATCTCGCGGGAGGTGATGGTG 7233515 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| || | || ||||| | ||| | | | |||| || ||| Sbjct 7233514 GGCTTCTTGTTGTAGCGGGCAAGACGAGAAGACTCCTGGGCAAGCTTCTCGAAAATATCG 7233455 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||| || |||||||| ||| | |||| | ||||| || | |||||| |||||| Sbjct 7233454 TTGATGAAACTGTTCATGATTCCCATGGCCTTGCTAGAGATTCCGATGTCGGGATGCACC 7233395 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| ||||||||| ||||| Sbjct 7233394 TGCTTCAGCACCTTGAAGATG 7233374 >seq2926 Length=5312268 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| |||||| |||||||| |||| |||||| || | |||| || | Sbjct 3420921 GCTGCCAATTACCTCAACATCAAGAGCTTGCTGGATCTTACCTGTCAAACTGTCGCTGAT 3420980 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| ||| |||| |||||||||||||| || || |||||||| Sbjct 3420981 ATGATCAAGGGGAAGACGCCAGAGGAGATCCGCAAAACATTCAACATCAA 3421030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106858702913506