Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq268 96.9 3e-15 seq813 91.5 1e-13 seq1361 86.0 5e-12 seq1576 82.4 6e-11 >seq268 Length=6919517 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GCCTG 110330 |||||||| || || |||||| | || || ||||| || ||| | ||| || || | Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | || || ||||||| || |||||||| | || |||| Sbjct 3332206 --GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATC 3332149 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || | |||| |||||||||||||| ||||||| | |||| | || ||||||| Sbjct 3332148 AGCAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACA 3332089 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | || || |||||||| ||| |||| |||| | || ||||| || || Sbjct 3332088 ATATCCAGAAAGAATCAACGCTGCATCTGGTTCTGAGGCTGCGCGGTGG 3332040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | ||||| || || || || |||| ||| | Sbjct 3332950 ATGCAAATCTTTGTGAAAACCCTTACCGGTAAGACGATCACTCTCGAGGTCGAGAGCTCC 3332891 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||||| || || ||||| | || || || Sbjct 3332890 GATACCATCGACAACGTCAAGGCGAAGATTCAGGATAAGGAAGGAATTCCGCCTGACCAG 3332831 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || |||||||| || || | |||||| | |||||||||||| Sbjct 3332830 CAGCGTCTCATCTTCGCCGGGAAACAGCTCGACGACGGCAGAACCCTAGCGGATTACAAC 3332771 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| ||||| | ||| | | ||||| || || Sbjct 3332770 ATTCAGAAGGAGTCTACTCTGCACCTCGTGCTCCGTCTGCGCGGAGG 3332724 >seq813 Length=2089867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | ||| ||||| || ||||| |||| ||| || |||||| |||| Sbjct 1896264 GACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGAA 1896323 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| || || |||| ||||||||||| || || ||||| || | ||| |||| || Sbjct 1896324 GATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACCTGGTTTTG 1896383 Query 110486 AGACT 110490 ||||| Sbjct 1896384 AGACT 1896388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| ||||| | ||| ||||| || || ||||| | || || |||||||||||| Sbjct 907525 GACAAGGAAGGAATCCCCCCAGATCAGCAGAGGCTTATCTTCGCCGGAAAACAGCTGGAG 907584 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | | || | |||||||||||||| || || || || || | ||| ||||| | Sbjct 907585 GATGGCCGCACTCTTGCGGATTACAACATCCAGAAGGAGTCGACTCTTCACTTGGTGCTC 907644 Query 110486 AGACTGCGAGGGGGAA 110501 || || || || |||| Sbjct 907645 AGGCTCCGCGGTGGAA 907660 >seq1361 Length=2134540 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| |||| || || ||||| || | || ||| | Sbjct 1710658 ATGCAGATCTTTGTCAAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCA 1710717 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| |||||| | || || ||| Sbjct 1710718 GATACCATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAA 1710777 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | ||| ||||||||||| ||||||| || ||| | || || |||||| Sbjct 1710778 CAGCGTTTGATCTTTGCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAAC 1710837 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || |||||| | || ||||| Sbjct 1710838 ATTCAGAAGGAGTCTACGCTCCATTTGGTG 1710867 >seq1576 Length=5940209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| || || ||| | || ||| | Sbjct 2986006 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2985947 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || || || ||||||||||| | ||| ||||| Sbjct 2985946 GACACTATTGACAATGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2985887 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||||| | | || |||| ||||||||| Sbjct 2985886 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGGCCGATTACAAC 2985827 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| | || ||||| Sbjct 2985826 ATCCAGAAGGAGTCTACCCTTCATTTGGTG 2985797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412824402309074