Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq179 138 2e-26 seq1421 123 4e-22 seq1576 122 1e-21 seq2705 109 9e-18 seq1770 104 4e-16 >seq179 Length=2504955 Score = 138 bits (152), Expect = 2e-26 Identities = 221/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| || || ||| | | || ||||| || |||||||| || ||| Sbjct 2366460 TCGCGA--GATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCGCTTTTTCAGC 2366517 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 || || |||||||| ||||| || ||||| ||||| ||||| || |||||| | | Sbjct 2366518 CAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGCAAAGGCCAAC 2366577 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||| || || | ||| ||| || ||||| | ||||||| ||| Sbjct 2366578 AAACGCTCAGCGAATGATTCCGAGCCATCA------ATCCAGCGGAGAGCCCACTTAGCC 2366631 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || ||| ||| ||||||| || || || ||| | || | ||||||||| | | Sbjct 2366632 TTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCTTCAGAA 2366691 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| ||| || || | || || ||| |||| |||||||| || ||||||||| Sbjct 2366692 TCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTCAGAGTGGATATTCTCGATGGCG 2366751 Query 794647 ATCTGGAAGCCATAAAA 794663 |||||||| || ||||| Sbjct 2366752 ATCTGGAATCCGTAAAA 2366768 Score = 129 bits (142), Expect = 9e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||||||||||||||| || ||||| || ||||| ||||||||| Sbjct 2366776 GCCTCCGCAACCTGGACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCG 2366835 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| |||||||| || | |||||| |||||||| ||||||| | | || Sbjct 2366836 TCGGAGGCGGCAAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGG 2366895 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||| | ||| | | || ||| || |||||||| || ||||| || || || Sbjct 2366896 GCTTCCCACT-GACGGAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACGC 2366954 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||| || |||||||||||||| || | |||| || ||||||| Sbjct 2366955 GACGGCTTTCTTGTACATCTCCCAGATTTGCGGGTACTCAATCGGGAACA 2367004 >seq1421 Length=9127415 Score = 123 bits (136), Expect = 4e-22 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| || || ||||||||||| | |||| ||| ||| | | Sbjct 7230308 TGAACTTGGTTACCGCCTTGGTGCCTTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAA 7230249 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||||||||||||||||||||| | ||| ||| |||||| || Sbjct 7230248 GAACCAAGCGCACGGCGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 7230189 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || || ||||| || | || |||| || ||||||| || |||| Sbjct 7230188 GGGCAAGACGAGAAGCCTC-CTGAGCAAGCTTCTCGAAAATATCGTTGATGAAACTGTTC 7230130 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| | ||||| || | ||| || ||||| ||||| ||||||||| Sbjct 7230129 ATGATCCCCATGGCCTTGCTAGAGATTCCAATGTCCGGATGCACTTGCTTCAGCACCTTG 7230070 Score = 120 bits (132), Expect = 5e-21 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| ||||| || || || |||||||||||| | |||| ||| ||| | | | | Sbjct 7233613 TTGGTGACAGCCTTAGTGCCTTCGGAGACGGCGTGCTTAGCCAATTCTCCGGGAAGAACC 7233554 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 | ||| |||||||||||||||||||||| | ||| ||| |||||| ||| || Sbjct 7233553 AAGCGGACGGCGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCA 7233494 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 || || | ||| | | | |||| || ||||||| || ||||||||| Sbjct 7233493 AGACGAGAAGACTCCTGGGCAAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATT 7233434 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| | ||||| || | |||||| ||||||||||| ||||||||| Sbjct 7233433 CCCATGGCCTTGCTAGAGATTCCGATGTCGGGATGCACCTGCTTCAGCACCTTG 7233380 >seq1576 Length=5940209 Score = 122 bits (134), Expect = 1e-21 Identities = 173/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| |||||||||||||| || || |||||||||||| |||| || || || | | Sbjct 5142059 TGAACTTAGTGACGGCCTTGGTGCCTTCAGAGACGGCGTGCTTGGCTAGCTCTCCAGGGA 5142118 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCGCTTGTTAG 1485586 || || | |||||||||||| ||||| ||| ||| | ||| || |||||| Sbjct 5142119 GGACAAGTCTCACGGCGGTCTGAATCTCACGGGAAGTGATGGTCGGCTT---CTTGTTGT 5142175 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || |||| || |||||| | ||| |||| |||||||||| || || Sbjct 5142176 ACCGAGCCAAACGAGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGT 5142235 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||||||| ||| | ||| ||||||| || | ||| || || |||||||| ||||||| Sbjct 5142236 TCATGATCCCCATGGCCTTGCTGGAGATTCCAATGTCCGGATGAACCTGCTTCAGCACCT 5142295 Query 1485707 TG 1485708 || Sbjct 5142296 TG 5142297 >seq2705 Length=3704500 Score = 109 bits (120), Expect = 9e-18 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || ||||| || ||||| |||||||||||| | |||||||| ||| | | | Sbjct 741273 ACTTAGTCACCGCCTTAGTCCCCTCAGAGACGGCGTGCTTAGCCAGTTCACCGGGAAGCA 741214 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || ||||| || ||||||||||| |||| | |||||| |||||| ||||| Sbjct 741213 CAAGCCGCACCGCCGTCTGGATCTCCCGGGAGGTGATCGTCGGCTTCTTGTTGTAGCGCG 741154 Query 1485593 CCAGGCGGCCGGCCT-CGGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | || | |||| | | ||| | | | |||| || || |||| || |||||| Sbjct 741153 CGAGCCTCGAAGCCTCCTGCGCCAGCTTC--TCGAAGATATCATTGATGAAGCTGTTCAT 741096 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| || | ||| ||||| ||||| || || |||||| Sbjct 741095 GATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGGTGGACCTGTTTCAGGACCTTG 741038 >seq1770 Length=3924893 Score = 104 bits (114), Expect = 4e-16 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| || ||||| || || |||||||||||| | |||| ||||||| | | | | Sbjct 1380908 TTGGTGACTGCTTTGGTGCCTTCAGAGACGGCGTGCTTTGCCAATTCGCCGGGAAGAACC 1380849 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | | |||||||||||||||||| ||| ||| | ||| || |||||| ||| Sbjct 1380848 AATCTCACGGCGGTCTGGATCTCACGGGAAGTGATGGTCGGCTT---CTTGTTGTAGCGG 1380792 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| ||| ||||| | ||| |||| || || |||| || ||||||| Sbjct 1380791 GCCAAGCGAGATGCCTCTTGGGCGAGCTTCTCGAAGATATCATTGATGAAGCTGTTCATG 1380732 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| ||||||| || | || || || || ||||| ||||||||| Sbjct 1380731 ATGCCCATGGCCTTGCTGGAGATCCCAATATCAGGATGAACTTGCTTCAGCACCTTG 1380675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915882811750502