Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1830 116 3e-21 seq1361 98.7 8e-16 seq268 95.1 1e-14 seq1576 86.0 5e-12 seq813 82.4 6e-11 >seq1830 Length=882674 Score = 116 bits (128), Expect = 3e-21 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || |||| ||| || ||||| || | ||| |||| ||| Sbjct 346878 ATGCAGATCTTTGTCAAGACCTTAATAGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 346819 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| ||||||| || || |||||| | ||| ||||| Sbjct 346818 -GATACAATTGACAACGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCA 346760 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| |||| ||| || || ||||| ||||| | | ||| | || |||||||| Sbjct 346759 GCAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTTGCAGACTACAA 346700 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 |||| |||||||||| || | || ||||| || || | |||||| Sbjct 346699 CATTTAAAAGGAGTCAACACTCCATTTGGTGCTGCGACT--GAGGGG 346655 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG--GCTG 107613 ||||| || || ||||| || |||||||| || ||||| || | ||| |||| ||| Sbjct 346650 ATGCAGATCTTCGTCAAGACCTTAACAGGGAAGACCATCACATTGGAAGTGGAGAAGCTC 346591 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| ||||||| | | |||| | ||| |||| Sbjct 346590 A-GATACAATTGACAATGTTAAAGCAAAGATTC------AGGGAGGCATTCCCCCAGATC 346538 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| |||| |||| ||| || || ||||| | ||| | | ||| | || ||||||| Sbjct 346537 AGCAGCGACTGATTTTTGCTGGCAAGCAGCTCGCGGATGGGAGGACACTTGCAGACTACA 346478 Query 107734 ACATTCAAAAGGAGTC 107749 ||||||||||| |||| Sbjct 346477 ACATTCAAAAGAAGTC 346462 >seq1361 Length=2134540 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| |||| || || ||||| || | || ||| | Sbjct 1710658 ATGCAGATCTTTGTCAAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCA 1710717 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||||| || || |||||| | || || || Sbjct 1710718 GATACCATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAA 1710777 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| ||||||||||| ||||| | | ||| | || ||||||||| Sbjct 1710778 CAGCGTTTGATCTTTGCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAAC 1710837 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||||| |||||||||||| | || ||||| || |||| |||||| Sbjct 1710838 ATTCAGAAGGAGTCTACGCTCCATTTGGTGCTGCGATT--GAGGGG 1710881 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/202 (70%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| |||||| |||| ||||| ||||| ||| | || ||| ||| Sbjct 1709518 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCA 1709577 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | ||||| |||||| ||||| ||||| | || ||||| Sbjct 1709578 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1709636 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 |||||||| |||| ||| || || ||||| || |||||| || | || |||| Sbjct 1709637 ACAGAGACTGATTTTTGCTGGAAAGCAGCTTGATGATGGACGC----ACTCTTGCAGACT 1709692 Query 107731 ACAACATTCAAAAGGAGTCTAC 107752 |||| || || ||||||||||| Sbjct 1709693 ACAATATCCAGAAGGAGTCTAC 1709714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| |||||| | || ||||| ||||| || | ||| ||| ||| | Sbjct 1710202 ATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACTCTTGAAGTTGAGAGCTCG 1710261 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| ||||| ||||| | ||| ||||| Sbjct 1710262 -GATACCATTGACAATGTGAAGGCTAAGATTCAAGATAAGGAAGGGATTCCCCCAGATCA 1710320 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || |||| ||| || || ||||| || || | | || | || |||||||| Sbjct 1710321 ACAGAGGCTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAA 1710380 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||| ||||| || Sbjct 1710381 CATCCAAAAAGAGTCCAC 1710398 >seq268 Length=6919517 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || || || || || || |||| ||| ||| Sbjct 3332950 ATGCAAATCTTTGTGAAAACCCTTACCGGTAAGACGATCACTCTCGAGGTCGAGAGCTC- 3332892 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || |||||| ||||| ||||| | || || || Sbjct 3332891 CGATACCATCGACAACGTCAAGGCGAAGATTCAGGATAAGGAAGGAATTCCGCCTGACCA 3332832 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || |||||||| || |||| || ||| | ||||| ||||| Sbjct 3332831 GCAGCGTCTCATCTTCGCCGGGAAACAGCTCGACGACGGCAGAACCCTAGCGGATTACAA 3332772 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| ||||| | ||| Sbjct 3332771 CATTCAGAAGGAGTCTACTCTGCACCTCGTG 3332741 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || |||||| | || || ||||| || ||| | ||| || ||| | Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || |||||| ||||||||||| | || ||||| Sbjct 3332206 -GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCA 3332148 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| |||||||||||||| ||||| | | ||| | || || ||||| Sbjct 3332147 GCAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAA 3332088 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || || ||| |||| |||| |||| |||| || || Sbjct 3332087 TATCCAGAAAGAATCAACGCTGCATCTGGTTCTGAGGCTGCGCGGTGG 3332040 >seq1576 Length=5940209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || ||||| || || ||| | || ||| ||| Sbjct 2986006 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAAAGCTC- 2985948 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||| || || |||||||| | ||| ||||| Sbjct 2985947 CGACACTATTGACAATGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCA 2985888 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| ||||| | | || |||| || ||||| Sbjct 2985887 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGGCCGATTACAA 2985828 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | || ||||| Sbjct 2985827 CATCCAGAAGGAGTCTACCCTTCATTTGGTG 2985797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || ||||| || || || |||| ||| ||| Sbjct 2986234 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACAATCACTCTCGAGGTGGAAAGCTC- 2986176 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||| || || |||||||| | ||| ||||| Sbjct 2986175 CGACACCATTGACAACGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCA 2986116 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||| || || | | ||| |||| || ||||| Sbjct 2986115 GCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTGGCCGATTACAA 2986056 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| ||||||||||| | || ||||| |||| Sbjct 2986055 CATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGAG 2986020 >seq813 Length=2089867 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || |||||||| | ||| |||||||||||||| |||| ||| || |||||| |||| Sbjct 1896264 GACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGAA 1896323 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || |||| || |||||||| || ||||| || || | ||| |||| ||| Sbjct 1896324 GATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACCTGGTTTTG 1896383 Query 107769 AGA 107771 ||| Sbjct 1896384 AGA 1896386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398860184039002