Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1361 98.7 2e-15 seq1830 93.3 7e-14 >seq1361 Length=2134540 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | || ||||| || |||||| |||| || || | || Sbjct 1709291 TGCAGATCTTTGTAAAGACTCTTACTGGAAAGACTATTACTCTTGAGGTTGAGAGTTCCG 1709350 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||||| ||| ||| ||||| ||||| || ||||||| Sbjct 1709351 ATACCATTGATAATGTTAAGGCAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAAC 1709410 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| ||||||||||| || || | || ||| | || | |||| ||||||| Sbjct 1709411 AGCGACTGATTTTTGCAGGAAAGCAGCTTGAAGATGGCCGTACACTTGCAGACTATAATA 1709470 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | ||||| || || || |||| Sbjct 1709471 TCCAAAAGGAGTCTACCCTCCA 1709492 >seq1830 Length=882674 Score = 93.3 bits (102), Expect = 7e-14 Identities = 157/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||| | |||||||| || || || |||| || ||| | | | Sbjct 347104 TGCAGATCTTTGTGAAGACACTCACAGGAAAGACCATCACACTTGAGGTTGAAGTTCA-G 347046 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || ||| ||| ||||||||||| || || || | Sbjct 347045 ATACCATTGACAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCCCCAGACCAGC 346986 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| || || || | || ||| ||| || | |||| || |||| Sbjct 346985 AGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACACTTGCAGACTACAATA 346926 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || |||||||||| | || | || ||||| Sbjct 346925 TTCAGAAGGAGTCAACACTCCATTTAGTGCTGCGCCTGAGGGGAGG 346880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786132811040560