Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq3418 93.3 2e-14 seq3417 93.3 2e-14 seq2791 89.7 2e-13 >seq3418 Length=161897 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38342 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38401 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 38402 CTGCTCTACCCCGC 38415 >seq3417 Length=265768 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 180595 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 180536 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 180535 CTGCTCTACCCCGC 180522 >seq2791 Length=2666840 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||| ||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 2574698 GTTACGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 2574639 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 2574638 CTGCTCTACCCCGC 2574625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181595828953116