Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1361 84.2 4e-11 >seq1361 Length=2134540 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 81691 TTCTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTG 81750 ||| | |||| || ||||| |||||| ||||| | ||| ||||||||||||||||||| | Sbjct 1709659 TTCCAGCAAAAATCAGTCTCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTAG 1709600 Query 81751 CTTTTATATTTTCAATCGTAT 81771 | |||| ||| ||||| |||| Sbjct 1709599 CCTTTACATTGTCAATGGTAT 1709579 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 81691 TTCTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTG 81750 ||| | |||| || ||||| |||||| ||||| | ||| ||||||||||||||||||| | Sbjct 1709887 TTCCAGCAAAAATCAGTCTCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTAG 1709828 Query 81751 CTTTTATATTTTCAATCGTAT 81771 | |||| ||| ||||| |||| Sbjct 1709827 CCTTTACATTGTCAATGGTAT 1709807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903372601756480