Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq805 95.1 3e-14 seq179 87.8 4e-12 >seq805 Length=3887791 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 304933 TATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGG 304992 ||| ||||| ||||||||||||| |||||| | || || | | | | |||||| | Sbjct 1369851 TATTCAGGCTACTCAAAGATCTGGTAGACCTATCAAATCAAT-ATGTAGCAGATTAAAAG 1369793 Query 304993 TAAA-GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAA 305051 ||| |||||||| || ||||||| | ||||| |||||||| |||||| ||| | | Sbjct 1369792 CAAAAGAGGGTCGAATCAGAGGTAACTTGATGGGTAAACGTGTGGATTTTTCTGCTCGGA 1369733 Query 305052 GTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATT 305110 ||| ||||| |||||| | |||| || || |||| |||| ||| || || ||| Sbjct 1369732 CTGTGATCACTCCTGATCCAACTATTAACATTGATCAATTGGGAG-TCCCATGGAGTATT 1369674 Query 305111 GCTTTAAAACTAACATTTCCAGA 305133 ||| | || || || | |||||| Sbjct 1369673 GCTCTGAATCTCACTTATCCAGA 1369651 >seq179 Length=2504955 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || |||||||||||||| || || ||||| || || ||| ||||| || || ||||| Sbjct 2366573 GCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTG 2366514 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||| || ||||||| || | || || || ||| | || |||||| ||||||| Sbjct 2366513 AAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAG 2366454 Query 131987 GCATTGCA 131994 | ||||| Sbjct 2366453 GGCTTGCA 2366446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186760825758698