Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1576 122 6e-23 seq1830 96.9 2e-15 seq1361 96.9 2e-15 seq268 96.9 2e-15 seq302 95.1 8e-15 seq688 93.3 3e-14 seq813 91.5 1e-13 seq1421 89.7 3e-13 >seq1576 Length=5940209 Score = 122 bits (134), Expect = 6e-23 Identities = 173/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||||||| | ||||||||| || || ||| || || ||| Sbjct 2985768 AAAATCTGCATCCCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATG 2985827 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||| || ||||| | || || | || ||||| ||||| || | | |||| Sbjct 2985828 TTGTAATCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGC 2985887 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||||||||||| ||||| || | |||| ||| | ||||| Sbjct 2985888 TGATCTGGGGGGATTCCTTCTTTGTCCTGGATTTT-TGCCTTGACATTGTCAATAGTGTC 2985946 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| |||| ||||| || || || || | || || |||||||||||||| Sbjct 2985947 GGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| | | ||||||||| || || ||| || || ||||||||||||| Sbjct 2986008 CCACCCCTCAGCCTCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 2986067 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||| || || || | | |||||||||| | || Sbjct 2986068 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGG 2986127 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| || | || | ||| | ||||||| |||||| Sbjct 2986128 ATTCCTTCTTTGTCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCAC 2986186 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 2986187 CTCGAGAGTGATTGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | ||||| || || ||| || || || ||||||||||||| | Sbjct 2986236 CCACCCCTCAAACGGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCG 2986295 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||||||||| || |||| | |||||| ||| | || Sbjct 2986296 AGGGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 2986355 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || | | || | ||| | ||||||| || || Sbjct 2986356 ATACCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAAC 2986414 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | ||||| || ||||||||||| Sbjct 2986415 TTCCAGGGTGATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 2986462 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| ||| || || ||| || || || |||||||||| | Sbjct 2986692 CCACCCCTGAGACGGAGCACCAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCG 2986751 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || |||| | ||||| ||| | || Sbjct 2986752 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGA 2986811 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || ||| | || | ||||||| || || Sbjct 2986812 ATTCCTTCCTTGTCCTGGATCTTAGCCTT-AACGTTATCGATGGTGTCGGAACTCTCGAC 2986870 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || |||| ||||| |||||||||||||| Sbjct 2986871 CTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 2986918 >seq1830 Length=882674 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| || | ||||||||| || || ||| |||| |||||||| || | Sbjct 346652 CCTCCCCTCAGTCGCAGCACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGCA 346711 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || || || |||||||||| |||||||||||| | || Sbjct 346712 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 346771 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCT-TGAT-TCCA 33700 | ||||| ||||| ||| || || || ||| | |||| ||| || | | |||| Sbjct 346772 ATGCCTTCCTTGTCCTGAATCTT-TGCTTTAACGTTGTCA-ATTGTATCTGAGCTCTCCA 346829 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||| |||| || || |||||||||||||| Sbjct 346830 CTTCCAATGTGATGGTCTTCCCTATTAAGGTCTTGACAAAGATCTGCAT 346878 >seq1361 Length=2134540 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| || | ||||||||| || || ||| || || |||||||| || | Sbjct 1710885 ACCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGC 1710826 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | || || | ||||| || ||||| ||||||||||| || ||| | || Sbjct 1710825 AAGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGG 1710766 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | ||||| ||||| ||| || || | |||| ||| | ||| || ||| | Sbjct 1710765 AATGCCTTCCTTGTCCTGAATCTT-TGCCTTCACATTGTCAATGGTATC---TGAACTCT 1710710 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || || |||| ||||| |||||||||||||| Sbjct 1710709 CAACCTCCAGTGTGATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCAT 1710658 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 |||||| ||| ||||||||| ||||||||||| | ||||| || | || || | || Sbjct 1710633 ATGTAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGTGTACGACCATCTTCAAGCTG 1710574 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||||| |||||||||| | || |||||| | || | ||||| ||||| || || Sbjct 1710573 CTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 1710514 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTAC 33721 || | |||| ||| | ||| || ||| ||| || || | ||||| || || | Sbjct 1710513 -TGCCTTCACATTGTCAATGGTATC---TGAACTTTCAACCTCCAGGGTGATGGTCTTCC 1710458 Query 33722 CTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||||||||| Sbjct 1710457 CAGTAAGTGTTTTGACAAAGATCTGCAT 1710430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | || | ||| || ||| ||||||||| |||||||| || | Sbjct 1710428 CCACCACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTGCA 1710369 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || |||||||||||||||| | ||| |||||| | || Sbjct 1710368 AGAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAGCCTCTGTTGATCTGGGGGA 1710309 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | ||||| || || ||| || ||| |||| ||| | ||| || | | | || | Sbjct 1710308 ATCCCTTCCTTATCTTGAATCTTAGCCTTC-ACATTGTCAATGGTATC-CGAGCTCTCAA 1710251 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 1710250 CTTCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1710202 >seq268 Length=6919517 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 |||||||| | | ||| | || | ||| |||||| || || || |||||||||||| Sbjct 3331809 TCACCACCGCGAAGACGGAGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCG 3331868 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 | || ||||| | || || | ||||| ||||| |||||||| |||||||| ||| | Sbjct 3331869 GCTAGGGTGCGCCCATCCTCGAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCTGGA 3331928 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 || | ||||| ||||| |||||| | | |||| || | || ||| || Sbjct 3331929 GGAATGCCTTCCTTGTCTTGGATTTTC-GCCTTGACATTATCAATTGTATCGGAGCTCTC 3331987 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | ||||| || || || ||||| || || || || ||||||||| Sbjct 3331988 CACCTCCAGAGTGATTGTCTTCCCAGTTAATGTCTTCACGAATATCTGCATA 3332039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || ||||| |||||||| | || || ||| |||| || | ||||| ||||| ||| Sbjct 3332304 TCCTTCTGTATATTGTAATCAGCTAGGGTTCGTCCGTCCTCGAGCTGTTTCCCGGCGAAA 3332363 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||||||||| |||| | ||| || ||||| ||| || | | |||| Sbjct 3332364 ATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTGAATCTT-AGCCTTGACATT 3332422 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | || ||| || || || | || ||||| ||||| || || ||||| || Sbjct 3332423 GTCGATCGTATCGGAGCTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGGTTTTCAC 3332482 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 3332483 GAAGATCTGCAT 3332494 >seq302 Length=4569211 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| |||||| || |||||||| || | | || || |||| || Sbjct 222420 CACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTC 222479 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || |||||||| || || | |||||||| || | || | || || ||||| Sbjct 222480 CAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTG 222539 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||||| |||| ||| ||| | ||||||| |||||||| || | || || || | Sbjct 222540 AATTTTCGCCTTCA-CATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCT 222598 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || ||||||||||| Sbjct 222599 TCCCCGTCAGGGTTTTCACGAAGATCTGCAT 222629 >seq688 Length=8729492 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | || | ||| | || || ||| ||| || || |||||||| |||| Sbjct 4649681 CACCACCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 4649622 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | || || ||||| || || | |||||||| || ||| Sbjct 4649621 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCG 4649562 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || |||| ||| ||| | |||||| ||||| Sbjct 4649561 GGATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CATTGTCGATGGTGTCCGACGATTCA 4649503 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||||| || || || | || || |||||||||||||| Sbjct 4649502 ACCTCGAGGGTGATCGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 4649453 >seq813 Length=2089867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | ||| | ||| || ||| ||| || || |||||||| |||| | Sbjct 907430 CCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 907371 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||||||||||| || |||| | |||||| || | || Sbjct 907370 AGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 907311 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| ||||| || || || | || | ||||||| ||||| Sbjct 907310 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACC 907251 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || |||| || || || |||||||||||| Sbjct 907250 TCGAGGGTGATGGTCTTTCCGGTTAGGGTCTTGACGAAGATCTGCATA 907203 >seq1421 Length=9127415 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || | |||||||| || ||| ||| || || || |||||||||| | Sbjct 1343634 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 1343693 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||| || ||||| || |||| | |||||| || |||| Sbjct 1343694 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 1343753 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || || | | | ||| | ||||||| || || Sbjct 1343754 ATGCCCTCCTTATCTTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAACTCTCGAC 1343812 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || ||||| |||| ||||| |||||||||||||| Sbjct 1343813 CTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1343860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328690307218560