Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3418 601 1e-167 seq2653 253 6e-63 seq2647 248 3e-61 seq3417 215 2e-51 seq1564 183 9e-42 seq2036 111 5e-20 >seq3418 Length=161897 Score = 601 bits (666), Expect = 1e-167 Identities = 716/961 (75%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1532 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1473 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || || || Sbjct 1472 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1414 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| |||||||| || || || || || | |||||| Sbjct 1413 ACCTGTTTCTGGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTATTATTCCGAC 1354 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || ||||||| ||||||||||||||||| || |||||||| Sbjct 1353 TTCTGCA--GCTATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAA 1296 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | |||||||| || || | |||| | || | |||||| | |||| | | Sbjct 1295 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1236 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 1235 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 1176 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| ||||| ||||| |||||||| || | || || ||||| | ||||||| | || Sbjct 1175 GTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGT-TTTCTTGATCTACCCAATCGG 1117 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 |||||| || || || |||| ||||||| | || ||||| ||||| ||||| | |||| | Sbjct 1116 TCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGAT 1057 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || |||||||| |||||||| || || ||| | || || ||||| Sbjct 1056 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCATATGTTAGGCGTAGCTGG 997 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || ||||||||||| ||||| ||||| |||| || | || | ||| Sbjct 996 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 938 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | ||| | ||||||| || || ||||| |||| Sbjct 937 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAG 878 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || ||||| |||||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 877 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 818 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 ||||||||| ||||| ||||||||||| | ||||| ||||| || ||||| || | Sbjct 817 GTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCT 758 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 ||||| |||| || || | || ||||| || || || ||||||||||| || |||| Sbjct 757 GGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAACGGTTTCAATTTCAACC 698 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | ||| | | || | | || ||||| ||| ||||||||||||| || | || |||| Sbjct 697 AATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTG 638 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| ||||||||||||||||| || ||||| | Sbjct 637 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG 578 Query 20487 C 20487 | Sbjct 577 C 577 >seq2653 Length=4899193 Score = 253 bits (280), Expect = 6e-63 Identities = 293/389 (75%), Gaps = 13/389 (3%) Strand=Plus/Plus Query 19878 CTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TC 19936 |||||||| |||||| ||||| ||||| |||||||| || | || || ||||| | || Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGT-TTTCTTGATC 3225490 Query 19937 TACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTC 19996 ||||| | |||||||| || || || |||| ||||||| | || ||||| ||||| ||| Sbjct 3225491 TACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 3225550 Query 19997 AACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCA--------TGCACCCGTTCC 20048 || | |||| | |||||||| || | || |||||||| | ||||||| || | Sbjct 3225551 AATT-CATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTC 3225609 Query 20049 ACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGC 20108 | ||| | || || |||||||||||||| || || ||||||||||| ||||| ||||| | Sbjct 3225610 ATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-C 3225668 Query 20109 TTGTTACGTCCTCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTTAC 20167 ||| || | || | ||| | | | || || ||| | ||| | ||| | |||||| Sbjct 3225669 TTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTAC 3225728 Query 20168 AAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGT 20227 | || || ||||| ||||| || ||||| |||||||| ||||||||||| ||||| || Sbjct 3225729 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 3225788 Query 20228 TTGATCTTCCAATACGCTTCTTTCAACAA 20256 |||||||| ||||| ||| ||||||||| Sbjct 3225789 TTGATCTTTCAATATGCTAGTTTCAACAA 3225817 >seq2647 Length=4788780 Score = 248 bits (274), Expect = 3e-61 Identities = 295/396 (74%), Gaps = 3/396 (1%) Strand=Plus/Minus Query 19928 TTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCG 19987 ||||| ||||||| | || ||||| || || || |||| ||||||| | || ||||| Sbjct 734478 TTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 734419 Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 20047 |||| ||||| | |||| | |||||||| | || || |||||||| |||||||| ||| Sbjct 734418 AGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCATTC 734359 Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 || ||| | || || ||| |||||||||| || || |||||||||| ||||| ||||| Sbjct 734358 CATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTC- 734300 Query 20108 CTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTA 20166 |||| || | || | ||| | | || || | || | ||| | ||| | ||||| Sbjct 734299 CTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGTTA 734240 Query 20167 CAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACG 20226 ||| || || ||||| ||||| | ||||| ||||||| | ||||||||| ||||| || Sbjct 734239 CAAATTCGGTCAAGAGGAAGAC-CTTATAATATCGTAGTTGTTCATGGTTATTTTGGCCG 734181 Query 20227 TTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 20286 ||||||||| |||| ||| ||||||||| ||||| ||||||||||| | ||||| Sbjct 734180 ATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGC 734121 Query 20287 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 20322 |||| || | ||| || |||||| |||| || || Sbjct 734120 TTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGG 734085 Score = 107 bits (118), Expect = 6e-19 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 20329 TACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGG 20388 ||| ||||| || || || ||||||||||| || ||||| || | | || | | || Sbjct 733757 TACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGTCAAGG 733698 Query 20389 TCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGAT 20448 ||||| ||| ||||||||||||| || | || | |||||| || || | || || || Sbjct 733697 CCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAGTTAT 733638 Query 20449 GCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||| | ||||||| ||||||||| || ||||| || Sbjct 733637 GCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGC 733599 >seq3417 Length=265768 Score = 215 bits (238), Expect = 2e-51 Identities = 236/314 (75%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 20174 GGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATC 20233 || ||||| ||| | || ||||| |||||||| |||||| ||| ||||| || |||||| Sbjct 156208 GGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGATC 156149 Query 20234 TTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 20293 |||||||| ||| ||||||||| ||||| ||||||||||| | ||||| ||||| Sbjct 156148 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCT 156089 Query 20294 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 20353 || || || || |||||| |||| || || | || ||||| || || || || ||| Sbjct 156088 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGT 156029 Query 20354 TTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 20413 | || || ||||| ||| | | || | | | || || || ||| | ||||||||||| Sbjct 156028 TGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTGAT 155969 Query 20414 ATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTC 20473 || | || |||||||| || || | || || ||||||||||| ||||||||||||||| Sbjct 155968 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 155909 Query 20474 CCACTTGACCTTGC 20487 || || ||||| || Sbjct 155908 CCTCTAGACCTAGC 155895 >seq1564 Length=1404973 Score = 183 bits (202), Expect = 9e-42 Identities = 235/322 (73%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || |||||||| ||||| ||||| || |||||||| || || ||||| || Sbjct 141128 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 141069 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 19715 || || || ||||| || ||||| || || || || || | |||||| | ||| Sbjct 141068 TCTGGATCTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCA 141009 Query 19716 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || || | ||||||| ||||||||||||||||| || ||||||||||| | | Sbjct 141008 --GCTATAAGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTAT 140951 Query 19776 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACA 19835 ||||||| || || | |||| | || | |||||| | |||| | | ||||| Sbjct 140950 ACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACA 140891 Query 19836 TGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCT 19895 |||| || |||||||||||||| | || || || ||| | ||||||||| |||||| | Sbjct 140890 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 140831 Query 19896 ACTCTGCTCCGGTTGCAGCCGC 19917 |||| ||||| |||||||| || Sbjct 140830 ACTCAGCTCCTGTTGCAGCTGC 140809 >seq2036 Length=7432206 Score = 111 bits (122), Expect = 5e-20 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 19991 ACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCAC 20050 || ||||| | |||| | |||||||| ||| | || |||||||| | |||||| || || Sbjct 2690559 ACTTTCAATTTCATGATTGTATTCCAGGCCAAGCACAACATTCTTACGCACCCATTTCAT 2690500 Query 20051 ATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 ||||| ||||| ||||||||||||| ||| | ||||||||||| ||||| ||||| Sbjct 2690499 ATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTCTATTCAGTGCTATGCATGGTTC 2690444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148822759225044