Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3418 563 3e-156 seq3417 217 4e-52 seq2653 210 6e-50 seq2647 205 3e-48 seq1564 183 9e-42 >seq3418 Length=161897 Score = 563 bits (624), Expect = 3e-156 Identities = 706/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1532 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1473 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 1472 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1414 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || || |||||||| || || || || || | | |||| Sbjct 1413 ACCTGTTTCTGGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTATTATTCCGAC 1354 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || ||||||| ||||||||||||||||| || |||||||| Sbjct 1353 TTCTGCA--GCTATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAA 1296 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | |||||||| || || | |||| | || | |||||| | |||| || | Sbjct 1295 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1236 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 1235 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 1176 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || |||||||||||||| || ||||| || | || |||||| | |||||||| ||||| Sbjct 1175 GTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGT 1116 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 || || |||| || | |||||| | || || || || || ||||| | |||| | Sbjct 1115 CAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATT 1056 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || || ||| | ||||| ||||| Sbjct 1055 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCATATGTTAGGCGTAGCTGGT 996 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||| ||||| ||||| ||||| | || || || | | ||| Sbjct 995 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 937 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| ||| | ||||||| || || ||||| ||||| Sbjct 936 CAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGA 877 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||| Sbjct 876 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 817 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| || ||||| ||||||||||| | ||||| ||||| || ||||| || || Sbjct 816 TTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTG 757 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 |||| |||| || || | || ||||| || || || |||||||| || || ||||| Sbjct 756 GTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCA 697 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || ||||| |||||||||||||||||| | | || || || Sbjct 696 ATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 637 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| |||||||||||||||||||| || || || || Sbjct 636 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 577 Query 29616 T 29616 | Sbjct 576 T 576 >seq3417 Length=265768 Score = 217 bits (240), Expect = 4e-52 Identities = 237/315 (75%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 29302 GGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATC 29361 || ||||| ||| | |||||||| |||||||| ||||| ||| ||||| || |||||| Sbjct 156208 GGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGATC 156149 Query 29362 TTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 29421 |||||||||||| |||||| || ||||| ||||||||||| | ||||| ||||| Sbjct 156148 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCT 156089 Query 29422 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 29481 || || || || |||||| |||| || || | || ||||| || || || || ||| Sbjct 156088 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGT 156029 Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 | || || ||||| || | | || | | | || || || ||||| |||||||||||| Sbjct 156028 TGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTGAT 155969 Query 29542 GTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTC 29601 | | || || |||||||| || | ||||| |||||||| |||||||||||||||||| Sbjct 155968 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 155909 Query 29602 CCACTTGATCTGGCT 29616 || || || || ||| Sbjct 155908 CCTCTAGACCTAGCT 155894 >seq2653 Length=4899193 Score = 210 bits (232), Expect = 6e-50 Identities = 280/386 (73%), Gaps = 11/386 (3%) Strand=Plus/Plus Query 29008 TGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTAC 29067 |||||| ||| |||||||||||||| || ||||| || | || |||||| | ||||| Sbjct 3225434 TGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTAC 3225493 Query 29068 CCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAAC 29127 ||| ||||||| || |||| || | |||||| | || || || || || ||||| Sbjct 3225494 CCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA- 3225552 Query 29128 TACATGCTGGTGTTCCAAGCCGAACATAACA--------TTCTCATGCACCCGTTCCACA 29179 | |||| | || ||||| || | || |||| |||| |||||||| || || | Sbjct 3225553 TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCATA 3225612 Query 29180 TGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTG 29239 || | ||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| |||| Sbjct 3225613 TGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTG 3225671 Query 29240 TCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAG 29298 | | || | ||| | || || || ||| | | | ||| | ||||||| Sbjct 3225672 GTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAGA 3225731 Query 29299 TTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTG 29358 || || ||||| ||||| |||||||| |||||||| ||||| ||||| ||||| || ||| Sbjct 3225732 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 3225791 Query 29359 ATCTTCCAATATGCTTCTTTCAATAA 29384 ||||| ||||||||| |||||| || Sbjct 3225792 ATCTTTCAATATGCTAGTTTCAACAA 3225817 >seq2647 Length=4788780 Score = 205 bits (226), Expect = 3e-48 Identities = 286/397 (72%), Gaps = 3/397 (1%) Strand=Plus/Minus Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 ||| || |||||||| |||| || || |||| || | |||||| | || || || Sbjct 734479 TTTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 734420 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 | || ||||| | |||| | || ||||| | || || |||||||| |||||||| || Sbjct 734419 TAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCATT 734360 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 ||| ||| | ||||| ||| | || ||||| ||||| ||||| |||| ||||| ||||| Sbjct 734359 CCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTC 734300 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 |||| | | || | ||| | | || || | || | ||| ||| | |||| Sbjct 734299 -CTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGTT 734241 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 |||| || || ||||| ||||| ||||||| ||||||| | ||| ||||| ||||| | Sbjct 734240 ACAAATTCGGTCAAGAGGAAGAC-CTTATAATATCGTAGTTGTTCATGGTTATTTTGGCC 734182 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | ||||||||| |||||||| |||||| || ||||| ||||||||||| | |||| Sbjct 734181 GATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTG 734122 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 29450 | |||| || | ||| || |||||| |||| || || Sbjct 734121 CTTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGG 734085 Score = 109 bits (120), Expect = 2e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 29457 TACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGG 29516 ||| ||||| || || || |||||||| || || ||||| || | | || | | || Sbjct 733757 TACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGTCAAGG 733698 Query 29517 TCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAAT 29576 ||||| |||||||||||||||||| | | || | |||||||| || | ||||| || Sbjct 733697 CCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAGTTAT 733638 Query 29577 GCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||| ||||||||| ||||||||| || || || ||| Sbjct 733637 GCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGCT 733598 >seq1564 Length=1404973 Score = 183 bits (202), Expect = 9e-42 Identities = 235/322 (73%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || |||||||| || || ||||| || |||||||| || || |||||||| Sbjct 141128 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 141069 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCA 28843 ||||| ||| || || || ||||| || || || || || | | |||| | ||| Sbjct 141068 TCTGGATCTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCA 141009 Query 28844 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 28903 || || | ||||||| ||||||||||||||||| || ||||||||||| | | Sbjct 141008 --GCTATAAGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTAT 140951 Query 28904 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACA 28963 ||||||| || || | |||| | || | |||||| | |||| || | ||||| Sbjct 140950 ACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACA 140891 Query 28964 TGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCAT 29023 |||| || |||||||||||||| | || || || ||| | || |||||| ||| |||| Sbjct 140890 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 140831 Query 29024 ACTCAGCTCCCGTCGCAGCGGC 29045 |||||||||| || ||||| || Sbjct 140830 ACTCAGCTCCTGTTGCAGCTGC 140809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146659647026628