Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq3418 610 2e-170 seq1564 215 1e-51 seq2653 208 2e-49 seq3417 205 3e-48 seq2647 190 6e-44 seq2036 96.9 1e-15 >seq3418 Length=161897 Score = 610 bits (676), Expect = 2e-170 Identities = 729/982 (74%), Gaps = 8/982 (1%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| || || |||||||| | Sbjct 1560 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1501 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||||| || | | | | || ||| | ||| || ||||| |||||||||||||| | Sbjct 1500 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 1442 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||| ||||||| Sbjct 1441 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACA 1382 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || || | |||||| | ||| || || || ||||||| ||||| Sbjct 1381 ATATTATCTCTGGTGCTATTATTCCGACTTCTGCA--GCTATAGGTTTACACTTTTACCC 1324 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 |||||||||||| || ||||||||||| | |||||||| || || | |||| | Sbjct 1323 AATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAAT 1264 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 1263 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1204 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||||||||||||| |||||| ||||||||||||||||| || || | Sbjct 1203 CCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTAC 1144 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 || || ||| | |||| ||| | ||||| || ||| || | ||||||| | || Sbjct 1143 CGCAGTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGG 1084 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 || |||||| ||||| | |||| |||||||||||||||| || ||||| || ||||| Sbjct 1083 AATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 1024 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || || ||| | || || |||||||| |||||||| || ||||| ||||| ||||| Sbjct 1023 CCCATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 964 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| ||| Sbjct 963 TGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACG 905 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 904 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 845 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || |||||||| ||||| |||| ||||| | Sbjct 844 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCT 785 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || ||||| | || | || | ||||| ||||||| Sbjct 784 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCAT 725 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | || || || || || ||||| ||| | |||| | | || ||||| ||| Sbjct 724 TCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTA 665 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 ||||||||||||| || | || ||||||||||| || | || || ||||| ||||||| Sbjct 664 ATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 605 Query 19679 ATGCTCATAACTTCCCACTTGA 19700 |||||||||||||||| || || Sbjct 604 ATGCTCATAACTTCCCTCTAGA 583 >seq1564 Length=1404973 Score = 215 bits (238), Expect = 1e-51 Identities = 242/322 (75%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| |||||||||||||| ||||| ||||| |||||||| || || || |||||| Sbjct 141128 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 141069 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 18934 | || ||| ||||| || ||||| || || || || || | |||||| | ||| Sbjct 141068 TCTGGATCTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCA 141009 Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 18994 || || | ||||||| ||||||||||||||||| || ||||||||||| | | Sbjct 141008 --GCTATAAGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTAT 140951 Query 18995 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACA 19054 ||||||| || || | |||| | || | |||||| | |||| || | ||||| Sbjct 140950 ACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACA 140891 Query 19055 TGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCT 19114 |||| || |||||||||||||| | || || || ||||||||||||||| |||||| | Sbjct 140890 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 140831 Query 19115 ACTCAGCTCCTGTTGCCGCAGC 19136 |||||||||||||||| || || Sbjct 140830 ACTCAGCTCCTGTTGCAGCTGC 140809 >seq2653 Length=4899193 Score = 208 bits (230), Expect = 2e-49 Identities = 283/392 (72%), Gaps = 11/392 (3%) Strand=Plus/Plus Query 19093 CGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT 19152 ||| |||||||| |||||| ||||||||||||||||| || || | || || ||| | Sbjct 3225428 CGCTCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTG 3225487 Query 19153 GTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACG 19212 |||| ||| | ||||| || ||| || | ||||||| | || || |||||| Sbjct 3225488 ATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 3225547 Query 19213 TTCAACTACATGCTTGTATTCCAGGCTGAACATAACA--------TCCTCATGCACCCGT 19264 ||||| | |||| |||||||||||||| | || |||| | || |||||||| | Sbjct 3225548 TTCAA-TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCAT 3225606 Query 19265 TCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTT 19324 | || ||| | || || |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 3225607 TTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 3225666 Query 19325 CGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGC 19383 | |||| || | || | ||| | ||||| || ||| | | || | ||| | || Sbjct 3225667 C-CTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGT 3225725 Query 19384 TACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGT 19443 |||| || || ||||| ||||| |||||||| || || ||||||||||| |||||||| Sbjct 3225726 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGC 3225785 Query 19444 CGGCTTATTTTCCAGTACGCATCCTTCAACAA 19475 || | || || || || || |||||||| Sbjct 3225786 CGATTGATCTTTCAATATGCTAGTTTCAACAA 3225817 >seq3417 Length=265768 Score = 205 bits (226), Expect = 3e-48 Identities = 230/308 (75%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 19393 GGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATT 19452 || ||||| ||| | |||||||| || || ||||||||| |||||||| || | || Sbjct 156208 GGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGATC 156149 Query 19453 TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCT 19512 ||||| || || |||||||| ||||| |||| ||||| || |||||||||||| Sbjct 156148 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCT 156089 Query 19513 GTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGC 19572 || || || || ||||| | || | || | ||||| |||||||||||| | ||||| Sbjct 156088 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGT 156029 Query 19573 TTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 19632 | || || ||||| ||| | |||| | | | || || || ||| | ||||||||||| Sbjct 156028 TGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTGAT 155969 Query 19633 ATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTC 19692 || | || ||||||||||| || | || || ||||| ||||||||||||||||||||| Sbjct 155968 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 155909 Query 19693 CCACTTGA 19700 || || || Sbjct 155908 CCTCTAGA 155901 >seq2647 Length=4788780 Score = 190 bits (210), Expect = 6e-44 Identities = 275/384 (72%), Gaps = 3/384 (1%) Strand=Plus/Minus Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 || ||| |||| ||| | || || || ||| || | ||||||| | || || | Sbjct 734478 TTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 734419 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 |||| ||||| | |||| |||||||||||| ||| || ||||| || |||||||| ||| Sbjct 734418 AGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCATTC 734359 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 || ||| | || || ||| |||| |||||||| || ||||| |||| ||||| ||||| Sbjct 734358 CATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTC- 734300 Query 19327 CTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | || | ||| | | ||||| | || | | |||| ||| | || || Sbjct 734299 CTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGTTA 734240 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 ||| || || ||||| ||||| ||||||| || || | || |||||| |||||||| || Sbjct 734239 CAAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTTTGGCCG 734181 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 | || ||| | || || |||||||| ||||| |||| ||||| || ||||| Sbjct 734180 ATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGC 734121 Query 19506 TTGGCCTGTGGTTGGCATTTGGTT 19529 ||||| ||| | || || ||||| Sbjct 734120 TTGGCTTGTAGCAGGTATCTGGTT 734097 Score = 104 bits (114), Expect = 7e-18 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605 || || |||||||||||| | || || || || || ||||| || | |||| | | Sbjct 733759 AGTACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGTCAA 733700 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 || ||||| ||| ||||||||||||| || | || | ||||||||| || | || || Sbjct 733699 GGCCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAGTT 733640 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||| ||||||||| ||||||||| || || Sbjct 733639 ATGCATGAATGTAATGCTCGTAACTTCCCTCTAGA 733605 >seq2036 Length=7432206 Score = 96.9 bits (106), Expect = 1e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 19210 ACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCAC 19269 || ||||| | |||| ||||||||||||| | || ||||| || | |||||| || || Sbjct 2690559 ACTTTCAATTTCATGATTGTATTCCAGGCCAAGCACAACATTCTTACGCACCCATTTCAT 2690500 Query 19270 ATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 ||||| ||||| |||||||| |||| || | ||||| ||||| ||||| ||||| Sbjct 2690499 ATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTCTATTCAGTGCTATGCATGGTTC 2690444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141143070946644