Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1361 100 3e-16 seq268 87.8 2e-12 seq1576 86.0 6e-12 >seq1361 Length=2134540 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | || | ||| | | | ||||||||||| ||||||||||| | || Sbjct 1710423 ACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTGCAAGAGT 1710364 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || |||| | | || || | |||||||||||| || || || Sbjct 1710363 ACGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAGCCTCTGTTGATCTGGGGGAATCCC 1710304 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || |||| | || | ||||| | ||| ||||| | Sbjct 1710303 TTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACTTCAAG 1710244 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||| |||||||| | || ||||||||| Sbjct 1710243 AGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATG 1710201 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||||| | | ||||| || |||||||||||||| | || | Sbjct 1710876 CAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCT 1710817 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||| || ||||||||||| | | |||| | ||||||||| |||||||| |||||||| Sbjct 1710816 CCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGAATGCCTTC 1710757 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| |||| | || | ||||| | ||| || || | || Sbjct 1710756 CTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAGTGT 1710697 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| || ||||| | || ||||||||| Sbjct 1710696 GATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCATG 1710657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| || || ||||| | ||||| |||||| ||||| || || | | Sbjct 1709483 GACTCCTTTTGGATATTATAGTCTGCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCA 1709424 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || ||||||||||||||||| || ||||| ||||| |||||| || | Sbjct 1709423 AAAATCAGTCGCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTTGCCTTAACA 1709364 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||| || || | || | || || ||||| ||||| ||| Sbjct 1709363 TTATCAATGGTATCGGAACTCTCAACCTCAAGAGTAATAGTCTTTCCAGTAAGAGTCTTT 1709304 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1709303 ACAAAGATCTGCAT 1709290 >seq268 Length=6919517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| | || ||||| ||| | |||| ||||| || || ||||| ||| | ||| Sbjct 3332046 CGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCGGCTAGGGTT 3332105 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| |||||||||||||| | | || | | ||| ||||| ||||| || ||| Sbjct 3332106 CGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGAGGGATTCCT 3332165 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 |||||||| ||| || |||| | || | ||||| | || ||||| | Sbjct 3332166 TCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCAACTTCTAGG 3332225 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| |||||||||||||| | ||| || ||||| Sbjct 3332226 GTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCAT 3332266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||| || || ||||||||||| | |||| | ||| | || |||||||| || ||| Sbjct 3332527 TTGATTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTGCTTCCCG 3332585 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | |||| |||||||| || || || || || ||||| ||||| ||| || || Sbjct 3332586 GCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTTAGCCTTG 3332645 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||||||| ||| || |||| || | ||| |||||||||| ||| Sbjct 3332646 ACATTGTCGATCGTATCGGAACTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGGTT 3332705 Query 132107 TTTATGAAAATCTGCAT 132123 || | ||| |||||||| Sbjct 3332706 TTCACGAAGATCTGCAT 3332722 >seq1576 Length=5940209 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| || ||||||||||| ||| || ||| || ||||||| Sbjct 2986026 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTTCGGCCATCTTCG 2986085 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| || | ||| |||||||| || || |||||||| || Sbjct 2986086 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 2986145 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 |||||| || | | || | || |||| ||||| |||| || | || || Sbjct 2986146 ATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGAGTGATTGTCTTG 2986205 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || | || ||||||||| Sbjct 2986206 CCGGTAAGGGTCTTGACAAAGATCTGCATG 2986235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476590836786480