Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1421 104 2e-17 seq268 89.7 5e-13 >seq1421 Length=9127415 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||||| || | || || |||| ||||| | Sbjct 1343860 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACTATTACTCTCGAGGTCGAGAGTTCC 1343801 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| ||||| ||||| || ||||| || ||| Sbjct 1343800 GACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGACCAG 1343741 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | || ||| || |||||||| || | | | | || |||||||||| Sbjct 1343740 CAGAGGCTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGTACCCTCGCCGATTACAAT 1343681 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || |||||| ||||||| || | ||||||| ||||| Sbjct 1343680 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGATTGAGGGGAGG 1343634 >seq268 Length=6919517 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || ||| | ||||| | ||||| ||| | Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || || ||| |||||||| || || || ||||||||| Sbjct 3332206 GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 3332147 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || || ||||| ||||| |||| ||| | |||||||||| Sbjct 3332146 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 3332087 Query 25355 ATTCAAAAAGAATCCAC 25371 || || |||||||| || Sbjct 3332086 ATCCAGAAAGAATCAAC 3332070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || || || |||| || |||| ||||| | | Sbjct 3332494 ATGCAGATCTTCGTGAAAACCTTGACTGGTAAGACGATTACTCTCGAGGTCGAGAGCTCC 3332435 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || || ||| || || |||||||| ||||| |||||| Sbjct 3332434 GATACGATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCGCCGGATCAG 3332375 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || | |||| || ||| ||||| ||||| || | ||| | ||| |||||||| Sbjct 3332374 CAGCGATTGATTTTCGCCGGGAAACAGCTCGAGGACGGACGAACCCT-AGCTGATTACAA 3332316 Query 25354 TATTCAAAAAGAATCCAC 25371 ||| || || ||||| || Sbjct 3332315 TATACAGAAGGAATCAAC 3332298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445075383341760