Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq179 221 2e-51 seq1421 107 3e-17 seq1576 102 1e-15 seq1770 96.9 5e-14 seq2705 93.3 6e-13 seq1834 86.0 9e-11 >seq179 Length=2504955 Score = 221 bits (244), Expect = 2e-51 Identities = 381/543 (70%), Gaps = 14/543 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 || ||| ||||||| ||| ||||||| || |||| || || ||||| |||||| | Sbjct 2367023 AATCCGGACCGCTTCTGTA-TGTTCCCGATTGAGTACCCGCAAATCTGGGAGATGTACAA 2366965 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTC 1455851 |||| ||| || || || ||||| || |||||||| || ||| || | | ||| Sbjct 2366964 GAAAG-CCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCTCTCAGGATCTCCGTC 2366906 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 | |||| | || | | ||||||| || || || |||||| | || ||||||||| Sbjct 2366905 -AGTGGGAAGCCCTAACCTCCGACGAGAAGCACTTTATTAAGCACATACTTGCCTTTTTT 2366847 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 |||||| ||| |||||||| ||||| || ||||| || || ||||| |||||||| Sbjct 2366846 -GCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTTCATGAAGGAGGTCCA 2366788 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | ||||| ||| ||||||||| ||||||||||||||||| || ||||||||||| Sbjct 2366787 GGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGAGAATATCCACTCTGA 2366728 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 | ||| || ||| | || || ||| ||||||| | | ||||||||| | || Sbjct 2366727 GATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGAGAAGGACAGGTTGTT 2366668 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 | ||| || || || ||||| | ||| ||| ||||| | ||||| | ||||| Sbjct 2366667 CCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTGGGCTCTCCGCTGGAT 2366608 Query 1456152 CAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGG 1456209 || ||| || | || || ||||| | | | |||||| | || ||||| Sbjct 2366607 ------TGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGG 2366554 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 ||||| ||||| || ||||| || ||||| || ||||| || |||||||| || ||||| Sbjct 2366553 GATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGGTCTGATGCC 2366494 Query 1456270 CGG 1456272 || Sbjct 2366493 GGG 2366491 >seq1421 Length=9127415 Score = 107 bits (118), Expect = 3e-17 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||| ||||| || || | |||| ||| || | |||| || Sbjct 7230065 ATCTTCAAGGTGCTGAAGCAAGTGCATCCG-GA--CATTGGA--ATC-TCTAGCAAGGCC 7230118 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCGGCACCGAGGCCGG 725029 ||| |||||||||| || ||||||| || |||| || | || ||||| Sbjct 7230119 ATGGGGATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAG-GAGGCTTC 7230177 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || || |||| ||||||| ||| ||| | | |||||||||||||||||||| Sbjct 7230178 TCGTCTTGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCGCCGT 7230237 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || | | | ||| ||| |||| | ||||||||||| || ||||||| Sbjct 7230238 GCGCTTGGTTCTTCCCGGAGAATTGGCTAAACACGCCGTCTCTGAAGGCACCA 7230290 Score = 105 bits (116), Expect = 1e-16 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||||||||| ||| || | | || ||| || | |||| || Sbjct 7233375 ATCTTCAAGGTGCTGAAGCAGGTGCATCCC-GA--CATCGGA--ATC-TCTAGCAAGGCC 7233428 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||| || |||| | | | ||| | | Sbjct 7233429 ATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAGTCTTCT 7233488 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || |||| ||||||| ||| ||| | | |||||||||||||||||||| Sbjct 7233489 CGTCTTGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCGCCGTC 7233548 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| || | | | ||| ||| |||| | ||||||||||||||| ||||| Sbjct 7233549 CGCTTGGTTCTTCCCGGAGAATTGGCTAAGCACGCCGTCTCCGAAGGCAC 7233598 >seq1576 Length=5940209 Score = 102 bits (112), Expect = 1e-15 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| || || || | |||| ||| |||| |||| || Sbjct 5142302 ATCTTCAAGGTGCTGAAGCAGGTTCATCCG-GA--CATTGGA--ATC-TCCAGCAAGGCC 5142249 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| | Sbjct 5142248 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCT 5142189 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || |||| || | ||||||| || ||| | ||| || ||||| ||||||||| Sbjct 5142188 CGTTTGGCTCGGTACAACAAG---AAGCCGACCATCACTTCCCGTGAGATTCAGACCGCC 5142132 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | || || | | || || || |||| |||||||||||| || ||||||| Sbjct 5142131 GTGAGACTTGTCCTCCCTGGAGAGCTAGCCAAGCACGCCGTCTCTGAAGGCACCA 5142077 >seq1770 Length=3924893 Score = 96.9 bits (106), Expect = 5e-14 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||| || || || | ||||| ||| |||| |||| || Sbjct 1380670 ATCTTCAAGGTGCTGAAGCAAGTTCATCCTGATA---TTGGG--ATC-TCCAGCAAGGCC 1380723 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||| || || |||| ||| | ||||| | Sbjct 1380724 ATGGGCATCATGAACAGCTTCATCAATGATATCTTCGAGAAGCTCGCCCAAGAGGCATCT 1380783 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 ||| |||| |||| ||||||| || ||| | ||| || ||||||||||||||| Sbjct 1380784 CGCTTGGCCCGCTACAACAAG---AAGCCGACCATCACTTCCCGTGAGATCCAGACCGCC 1380840 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | || | | | ||||||| |||| | |||||||||||| || ||||||| Sbjct 1380841 GTGAGATTGGTTCTTCCCGGCGAATTGGCAAAGCACGCCGTCTCTGAAGGCACCA 1380895 >seq2705 Length=3704500 Score = 93.3 bits (102), Expect = 6e-13 Identities = 167/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||||| |||||| || || ||||| ||||| || | | ||| ||| |||| ||| Sbjct 741029 CTATATCTTCAAGGTCCTGAAACAGGTCCACCCT-GA--CATCGGG--ATC-TCCAGCAA 741082 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC-GGCACCG-AG 725024 | ||||| |||||||||| || |||| || || |||| | | | ||| | | || Sbjct 741083 GGCCATGGGGATCATGAACAGCTTCATCAATGATATCTTCGA--GAAGCTGGCGCAGGAG 741140 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || | || ||||||| ||||||| |||||| | | || ||||||||||| Sbjct 741141 GCTTCGAGGCTCGCGCGCTACAACAAGAAGCCGACGATCACCTCCCGGGAGATCCAGACG 741200 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| || | | | ||| |||||||| | |||||||||||| ||||| || Sbjct 741201 GCGGTGCGGCTTGTGCTTCCCGGTGAACTGGCTAAGCACGCCGTCTCTGAGGGGAC 741256 >seq1834 Length=5332465 Score = 86.0 bits (94), Expect = 9e-11 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| |||||| || | | || ||| |||| |||| | Sbjct 4515145 ATCTTCAAGGTCCTCAAGCAGGTCCACCCC-GA--CATCGGA--ATC-TCCAGCAAGGCG 4515198 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC-GGCACC-GAGGCCG 725028 ||| ||| |||||| || |||||||||| | || | | | ||| | ||| || Sbjct 4515199 ATGGGGATTATGAACAGCTTCATCAACGACATCTTTGA--GAAACTGGCGCAAGAGTCCT 4515256 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 | || || || | ||||||| ||| ||| | | ||||||||||||||||||| Sbjct 4515257 CCAGGCTCGCCCGTTACAACAAGAAGCCCACAATCACCTCCCGCGAGATCCAGACCGCCG 4515316 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| || | | ||||||| | || | || ||||| || || ||||| Sbjct 4515317 TCCGCCTTGTCCTCCCCGGCGAATTAGCGAAACATGCCGTGTCTGAAGGCAC 4515368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177481527617716