Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq656 116 5e-21 seq3197 113 6e-20 seq418 113 6e-20 seq207 86.0 9e-12 >seq656 Length=2434700 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | |||| ||||| | ||| | || | ||||| |||| ||| ||| Sbjct 849134 CCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTAGCATAGGAACAATTCCA 849193 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | || || ||||| | ||| Sbjct 849194 TTGGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGGATATTGTGCACAGAA 849253 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||||||||| ||| |||| |||||| || | || |||||||| Sbjct 849254 ACACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATATG 849313 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||| | |||||| |||||| Sbjct 849314 CCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 849355 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| |||||||||| ||||| || | |||||| || ||||| ||| ||||||| Sbjct 848688 CTCTGTTTCATATTGCGTATAGAGTTTGTTGAATTCTTCACCCCAGCAATCTGCCAATCC 848747 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 ||| | ||||||||||| | ||||||||| ||| | ||| |||| | |||| Sbjct 848748 AGGGGACTCATTTGGACAAAACAATGACCATTGCCCAT--TGCTTTGTACTCTCTCCATA 848805 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||||| || | ||| ||||| ||| || ||||| | || || || ||||| Sbjct 848806 AATAGATCAGGTACCCAGAGAGC-ATAGAAAAGATCCCGGGCTCGATGCTCTTC 848858 >seq3197 Length=603451 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | |||| ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 139559 CCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTACCATAGGAACAATTCCA 139500 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||| ||||||||| || | || |||||||| | ||| Sbjct 139499 TTGGATGCCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGAATATTGTGCACAGAA 139440 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||||||||| ||| |||| |||||| || | || |||||||| Sbjct 139439 ATACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATATG 139380 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||| | |||||| |||||| Sbjct 139379 CCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 139338 >seq418 Length=2515040 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 |||||||| || | ||||| ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 419177 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 419118 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| || ||| ||| ||||| || | || || || ||| | ||| Sbjct 419117 TTGGATGTTCCATTCGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 419058 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || || |||| |||||| || | || ||||||||| Sbjct 419057 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 418998 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | ||| || |||||| Sbjct 418997 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 418956 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 ||||||||| |||||| || || ||||| || ||||| ||| |||||||||| Sbjct 419602 TTTCATATTCTGTATAAAGTTTCTCAAATTCTTCACCCCAGCAATCTGCCAATCCAGGTG 419543 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 ||||||||||| | || |||||| ||| | || |||| || |||||| |||| Sbjct 419542 CCTCATTTGGACAAAATAAAGACCACTGCCCATTACTCTGCACTCTTTCCATAAAGAGAT 419483 Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 | |||| ||| ||||| ||||||||||| | | || |||||| Sbjct 419482 CAGGAACCCAGAGAGCATAAAAGAGATCTCGTGCACGATGTTCTTC 419437 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | ||| ||||| || |||||||||||| || ||| | || | Sbjct 418772 AGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTGAGACATCAAGTG 418713 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| || || ||||| ||||| || || || || | | || | |||||| Sbjct 418712 GTATGTCCTGATGGCAGATTCAATATCATTCTTGTGGATCCCAACAGAAACTCTCATCAA 418653 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||| || ||| | | ||||| ||||| || |||| || Sbjct 418652 CATGTGTTGTGGCCTTTCCACAACTTTCCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 418593 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || |||||||| || || || || Sbjct 418592 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 418545 >seq207 Length=1184981 Score = 86.0 bits (94), Expect = 9e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| |||||||| ||||| ||||||||||| ||| | ||| || || |||| | Sbjct 1013109 CAGGCAAAGTCACAGTGTAGACCCTCATCTCTGGAAATAAGTTCATTTGAGAATGCCAAG 1013168 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || |||||||| | | |||||| |||||||| |||||| |||||| | ||| ||||| Sbjct 1013169 CCTGGCATTAGGCACCTCTTTTTAAGCCAAAAAATGGCA-CAAAAGCT-GGGAAGAGAAG 1013226 Query 39737 A 39737 | Sbjct 1013227 A 1013227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686879451821520