Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3069 82.4 6e-11 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||| || |||||||||||| || || ||| |||| ||| | || | ||||||| Sbjct 10263831 CAGTTTTATGTAGCCAATGGTGAACTATCTTGCCAAATGTACCAACGCTCTGCTGACATG 10263772 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || ||||||||||| || ||| | || || || | |||||||| || Sbjct 10263771 GGTCTTGGAGTGCCGTTTAACATTGCATCTTACTCCCTTCTGACATGCATGATTGCCCAT 10263712 Query 41199 GTT 41201 ||| Sbjct 10263711 GTT 10263709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439443225090