Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq268 138 1e-27 seq688 107 2e-18 seq1421 102 7e-17 seq3321 95.1 1e-14 seq1576 93.3 4e-14 seq1361 93.3 4e-14 seq813 84.2 2e-11 >seq268 Length=6919517 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || || |||| ||| | ||| || ||||| || |||||||| ||| Sbjct 3332040 CCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCGGCT 3332099 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || |||||||||||||| ||| |||| | | ||| ||||| || || Sbjct 3332100 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGAGGG 3332159 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| |||| | | || | || || | | ||||||| Sbjct 3332160 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCAACT 3332219 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||||| || |||| ||| || |||||||||||||| |||||||||||| || Sbjct 3332220 TCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCATACCT 3332270 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 |||||||||| || | || | || | ||||| || || ||||| ||||| || ||| Sbjct 3332724 CCTCCGCGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCCGCT 3332783 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || |||| ||||||||||| |||||| | ||||||||||| || || ||||| Sbjct 3332784 AGGGTTCTGC-CGTCGTCGAGCTGTTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGG 3332842 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||| || | | | || | || || | | || || Sbjct 3332843 AATTCCTTCCTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 3332902 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || || |||||||||||||||||||| Sbjct 3332903 CTCGAGAGTGATCGTCTTACCGGTAAGGGTTTTCACAAAGATTTGCAT 3332950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || |||||||| || ||| ||| || |||| ||||||||||| || Sbjct 3332298 GTTGATTCCTTCTGTATATTGTAATCAGCTAGGGTT-CGTCCGTCCTCGAGCTGTTTCCC 3332356 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| |||| | ||||| ||||||||||| | |||||| || || ||||| || Sbjct 3332357 GGCGAAAATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTGAATCTTAGCCTT 3332416 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | || || | | || || || ||||| || | || || |||| || Sbjct 3332417 GACATTGTCGATCGTATCGGAGCTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGGT 3332476 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 3332477 TTTCACGAAGATCTGCAT 3332494 >seq688 Length=8729492 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 4649649 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 4649590 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || |||||| ||| Sbjct 4649589 GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTC 4649530 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| || || || || | || ||||||||||| Sbjct 4649529 ACATTGTCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCGTCAGAGTC 4649470 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 4649469 TTCACAAAGATCTGCAT 4649453 >seq1421 Length=9127415 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | ||||| || | || || || || || |||||||||||| Sbjct 1343178 CCTCCCCTCAATCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCT 1343237 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||| || |||||| | || || | ||| || ||||| || Sbjct 1343238 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGA 1343297 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | | || | ||||| | | |||||| Sbjct 1343298 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATTGTGTCAGAGCTTTCAACC 1343357 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || |||| ||||| || || |||||||| ||||| |||||| || Sbjct 1343358 TCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATACCT 1343408 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| || | |||||||| | || || || || || |||||||| ||| Sbjct 1343632 TGCCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGG 1343691 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| ||||| || || |||||| | || || | ||| || ||||||| Sbjct 1343692 CGAGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCG 1343751 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| |||||| || | | | || | ||||| | || | Sbjct 1343752 GGATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGA 1343811 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| |||| || || || || |||||||||||||| ||||| Sbjct 1343812 CCTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1343860 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||||||| | || || || || || |||||||||||| Sbjct 1343406 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 1343465 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||| || |||||| | || || | |||||| || || || Sbjct 1343466 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 1343525 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | | || | ||||| | | ||||| Sbjct 1343526 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATTGTGTCGGAGCTCTCAACC 1343585 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||||| || || |||||||| ||||| ||||| Sbjct 1343586 TCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1343632 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||||||| | || || || || || |||||||||||| Sbjct 1342950 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCT 1343009 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||| || |||||| | || || | ||| || || || || Sbjct 1343010 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGG 1343069 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| ||||| | | || | ||||| | | |||||| Sbjct 1343070 ATTCCTTCTTTGTCCTGGATCTTAGCTTTCACGTTGTCAATTGTGTCGGAGCTTTCAACC 1343129 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || |||| ||||| || || || || || ||||| |||||| || Sbjct 1343130 TCCAAGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATACCT 1343180 >seq3321 Length=7168875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| || |||||||| | | ||||| |||| ||||||| || ||| Sbjct 34879 GTAGAATCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCGAGCTACTTTCCG 34820 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| || || || || || || | ||||| || || ||| || ||| Sbjct 34819 GCGAAGATGAGGCGTTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTC 34760 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || ||||| ||||| | || |||||||| || Sbjct 34759 ACATTGTCAATGGTGTCCGATGACTCGACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTC 34700 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 34699 TTCACAAAGATCTGCAT 34683 >seq1576 Length=5940209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | || || || || || || ||||| ||| Sbjct 2986234 TGCCACCCCTCAAACGGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGG 2986293 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || ||||||||||| |||||| | || || | ||| || || || | Sbjct 2986294 CGAGGGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTG 2986353 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || ||||||| || | | | || | ||||| | | |||| Sbjct 2986354 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAA 2986413 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | || ||||| || |||||||| ||||| ||||| Sbjct 2986414 CTTCCAGGGTGATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 2986462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | || || || |||||||| | ||||| || || ||||| ||||| ||| | Sbjct 2986008 CCACCCCTCAGCCTCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 2986067 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||||||||| || || ||| | || || | ||| ||||| || || Sbjct 2986068 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGG 2986127 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||| || || | | | || | ||||| | | ||| || Sbjct 2986128 ATTCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACC 2986187 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| || || || || |||||||| ||||| Sbjct 2986188 TCGAGAGTGATTGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 >seq1361 Length=2134540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | || | ||| | || || |||||||| || |||||||| Sbjct 1710430 TGCCACCACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTG 1710371 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | ||||| ||||| || ||||| |||| || | ||||||||| || | Sbjct 1710370 CAAGAGTACGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAGCCTCTGTTGATCTGGGG 1710311 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||| |||| | || | || || | | |||| Sbjct 1710310 GAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCAA 1710251 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| || | ||||| || ||||||||||||||||| ||||| Sbjct 1710250 CTTCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1710202 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| | | | ||| |||| ||| Sbjct 907184 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGCCCGTCCTCG 907125 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | || || | ||| || ||||| || | || || || || | Sbjct 907124 AGCTGTTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGG 907065 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | || || || || || |||| || Sbjct 907064 ATCTTGGCCTTGACGTTATCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATAGTCTTT 907005 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || ||||| ||||| Sbjct 907004 CCGGTTAGGGTTTTGACGAAGATCTGCAT 906976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || || || || ||||| || | | Sbjct 907658 CCACCGCGGAGCCTGAGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATC-CGC 907600 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | || || |||||||| |||||| | || || | ||| ||||| || || Sbjct 907599 AAGAGTGCGGCCATCCTCCAGCTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCTGGGGG 907540 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||||||| || | | | || | ||||||| | |||||| Sbjct 907539 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCTGAGCTTTCAAC 907480 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| ||||| || || || ||||||||||| Sbjct 907479 CTCCAGTGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 907432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424916698560816