Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq179 127 3e-24 seq2704 120 4e-22 seq418 104 3e-17 seq1262 87.8 2e-12 seq207 84.2 3e-11 >seq179 Length=2504955 Score = 127 bits (140), Expect = 3e-24 Identities = 185/259 (71%), Gaps = 13/259 (5%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||||| || || | ||||| |||||| | | || ||||| ||||| ||||| Sbjct 2366452 CCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCGCTTT 2366511 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| ||| | || || || || ||||||||||||||| ||||| ||||| ||||| Sbjct 2366512 TTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGCAAAG 2366571 Query 122797 GCAAAAAGGCGTTCGGCGAAGGA--GCGAGACTTTGCATCAAACCATTTCATTGCCCATT 122854 || || | || || ||||| || |||| |||||| ||| | ||||| | Sbjct 2366572 GCCAACAAACGCTCAGCGAATGATTCCGAG-----CCATCAATCCAGCGGAGAGCCCACT 2366626 Query 122855 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC---TGCTTCTTTT 122911 | ||||||||||| | ||| || ||||| | || || | || ||| | ||||| || Sbjct 2366627 TAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCTT 2366686 Query 122912 CAGATCCATCCTTAATGTA 122930 |||| |||||| ||||| Sbjct 2366687 CAGA---ATCCTTGATGTA 2366702 >seq2704 Length=3870086 Score = 120 bits (132), Expect = 4e-22 Identities = 299/449 (67%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| ||||| || | | | ||| || || ||||| | ||||||||||| || Sbjct 2119113 ATCAAACCGACCAGGCCTCAACAAGGCTGAGTCGAGAATATCAGCACGATTAGTGGCGGC 2119172 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 |||||| | ||| || || | || || || ||||| || || || | ||| |||| Sbjct 2119173 AATAACTATAATTCCGGTGTTTCCTTCGAAACCGTCCATTTCCGTCAGGAGTTGGTTAAG 2119232 Query 11572 TGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCGTTGCTTGCCCACCG 11630 ||||| |||||||| ||||| || || | | || | | | |||| || || | Sbjct 2119233 AGTTTGCTCTCTCTCGTCATTCCCTCCGCCAATC-CCGGTTCCTCTTTGCCGCCCAACAG 2119291 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 | ||||| ||||| | || ||||| || || ||||| ||| | | || || | Sbjct 2119292 CGTCAATTTCATCGACAAATACAATGCAGGGAGCGTTTTCCTTGGCTTTCTTGAAAAGGT 2119351 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | || || | ||||| || |||||||||||||| ||||| | | | || | | Sbjct 2119352 CACGGACACGAGATGCACCAACGCCAACAAACATCTCAACAAACTCCGAACCCGA-AATT 2119410 Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | || ||| || ||| | ||||||||| |||||| ||| || |||||||| || ||| Sbjct 2119411 GAGAAGAAAGGAACACCGGCTTCACCCGCTATGGCTTTGGCTAGTAGGGTCTTCCCGGTA 2119470 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTC 11869 || || ||| ||||||| | ||| ||||| || ||| | || | | ||| Sbjct 2119471 CCCGGAGGACCGACGAGAAGAACTCCTTTAGGGATGCGTGCTCCAACTGCAGTAAACCTC 2119530 Query 11870 TCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||||| | ||| | || ||||| | ||| Sbjct 2119531 TCGGGCTTCTTCAAGAACTCCACCACCTC 2119559 >seq418 Length=2515040 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || |||||||| || || ||||| | || ||| ||||| ||||| Sbjct 418784 CTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTG 418725 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || ||||||| | | |||| ||||| || | | |||||| || | | Sbjct 418724 AGACATCAAGTGGTATGTCCTGATGGCAGATTCAATATCATTCTTGTGGATCCCAACAGA 418665 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 || | ||| ||||||| ||||| |||||| | | || | || || || |||| Sbjct 418664 AACTCTCATCAACATGTGTTGTGGCCTTTCCACAACTTTCCCCT-GAACC-TTCAAGAGG 418607 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | | ||||||||||||| |||||| ||| || ||||| |||| || Sbjct 418606 TAAGACCTTTCAAGGGTTTTGAAACCAAAATAATCATAATCAAAGTCTCG 418557 >seq1262 Length=2036080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | |||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 1330795 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACAACCTGGGTTCAACTCCCGGT 1330736 Query 145347 AGGAGCTT 145354 |||| ||| Sbjct 1330735 AGGACCTT 1330728 >seq207 Length=1184981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAA-GCATAGAC 122716 |||||| || ||| ||||||||||||| ||||||||||||||||||||| || || | Sbjct 1013111 GGCAAAGTCACAGTGTAGACCCTCATCTCTGGAAATAAGTTCATTTGAGAATGCCAAG-C 1013169 Query 122717 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 ||||||| || | || ||| || | |||| |||| || || || Sbjct 1013170 CTGGCATTAGGCACCTCTTTTTAAGCCAAAAAATGGCACAAAA 1013212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005167332800