Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq179 132 6e-26 seq1043 95.1 1e-14 seq418 93.3 5e-14 >seq179 Length=2504955 Score = 132 bits (146), Expect = 6e-26 Identities = 186/259 (72%), Gaps = 13/259 (5%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || || ||||| | |||||||||||| ||| || ||||| ||||| ||||| Sbjct 2366452 CCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCGCTTT 2366511 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| |||||| || |||||||| || ||||||||||||||||| ||||| || || Sbjct 2366512 TTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGCAAAG 2366571 Query 130154 GCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 130211 || || | ||||||||| || || || | | ||||| ||| | ||||||| Sbjct 2366572 GCCAACAAACGCTCAGCGAATGATTCCGAGCC-----ATCAATCCAGCGGAGAGCCCACT 2366626 Query 130212 GCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTTCTTTT 130268 ||||| ||||| | ||| || || || | ||||| | || | ||||||| || Sbjct 2366627 TAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCTT 2366686 Query 130269 CTGATGGATCTTTGATGTA 130287 | || ||| |||||||| Sbjct 2366687 CAGA---ATCCTTGATGTA 2366702 >seq1043 Length=14449934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| ||||||||||| ||||| || || || || | ||||||||| || | Sbjct 9036848 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCA--C 9036791 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | || || | | ||| | || || || ||||||||||| || || || || | Sbjct 9036790 CTCCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATAAACACAATGC 9036731 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | |||| || ||| ||||| | ||| | |||||| || || |||||| Sbjct 9036730 A-GGGGGCTTTTGACTTGGCTTTCTCAAACAAATCCCTCACTCTGGAAGCCCCCACACCC 9036672 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||||| ||||||||| | | || | ||| | ||| || || || ||||| Sbjct 9036671 ACAAACAGCTCCACAAACTCTGAAGCTGCACAAGAAAAGAATGGAACCCCAGCCTCACCA 9036612 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | ||||| ||||| || || ||| Sbjct 9036611 GCCACTGCTCTAGCCAAAAGGGTTTTCCCAGTTCCAGGT 9036573 >seq418 Length=2515040 Score = 93.3 bits (102), Expect = 5e-14 Identities = 211/315 (67%), Gaps = 18/315 (6%) Strand=Plus/Plus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||||||||| || |||| || |||| |||||| || || || ||||||||||| || Sbjct 2302573 GAATTACCGGGAGGCCTACGGGATCTTCGCGTGCAACGGCATCCTGTTCAACCACGAATC 2302632 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATG---------GTATCAA 12034 || | || || | |||||||||| |||||||||| | | ||||| Sbjct 2302633 CCCGAGACGCGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGGCGGATCAA 2302692 Query 12035 ACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGA 12094 | |||| ||| | || || || | |||||||| | | || ||||| Sbjct 2302693 A---ATCG-GGCTCC--AAAGCAAGCTCTTCC---TGGGGAACTTACAGGCGTCAAGGGA 2302743 Query 12095 CTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGC 12154 ||||||| || ||||||||| ||||| |||||| | | ||||| || || || | Sbjct 2302744 CTGGGGATTCGCAGGGGACTATGTGGAAGCAATGTGGATGATGCTTCAGCAGGAGAAGCC 2302803 Query 12155 GGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTG 12214 |||||| || || || || |||| |||| | ||| |||| ||||||| | ||| || Sbjct 2302804 GGACGATTACGTGGTGGCCACGGAGGAGTCTCACACCGTGCAGGAGTTCTTGGAGGTGGC 2302863 Query 12215 CTTTAGGGAAGTTGG 12229 ||| || | ||||| Sbjct 2302864 GTTTGGGTATGTTGG 2302878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618408777356080