Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2704 116 4e-21 seq179 96.9 4e-15 seq418 95.1 1e-14 >seq2704 Length=3870086 Score = 116 bits (128), Expect = 4e-21 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 || || |||||| | ||||| || ||||| || || | ||| || |||||| || | | Sbjct 2119144 TCGAGAATATCAGCACGATTAGTGGCGGCAATAACTATAATTCCGGTGTTTCCTT--CGA 2119201 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GC 9673 |||| ||||| || |||| |||||||||| |||||| || | || |||||| || || Sbjct 2119202 AACCGTCCATTTCCGTCAGGAGTTGGTTAAGAGTTTGCTCTCTCTCGTCATTCCCTCCGC 2119261 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | || | | | |||| || || || ||||| ||||| | || || ||||| Sbjct 2119262 CAATC-CCGGTTCCTCTTTGCCGCCCAACAGCGTCAATTTCATCGACAAATACAATGCAG 2119320 Query 9734 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||||| || ||| ||| || || || ||||| || || || ||||| Sbjct 2119321 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGGTCACGGACACGAGATGCACCAACGCCAAC 2119379 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | ||| |||| || ||| || ||| | |||||||| Sbjct 2119380 AAACATCTCAACAAACTCCGAACCCGAA-ATTGAGAAGAAAGGAACACCGGCTTCACCCG 2119438 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | |||||| ||| || || ||||| || ||||| || Sbjct 2119439 CTATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCCGG 2119475 >seq179 Length=2504955 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || |||||||| | || || ||||| ||||||||||| ||||||||||| || Sbjct 2366594 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGT 2366535 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || || || || | ||||| || ||||| ||||| ||||| || | | |||||| || Sbjct 2366534 TTTTGTGCCATATTCTGGCTGAAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAAT 2366475 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||| | ||||| || || ||||| Sbjct 2366474 GAGTTGATCTCGCGAGATGAGGG 2366452 >seq418 Length=2515040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 104196 |||||| || | || |||||||||| ||||||||||||| | | || |||| || | Sbjct 418558 GAGACTTTGATTATGATTATTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTCTTGAA-G 418616 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || ||| |||||| ||||| ||||||| ||| | || | | || || Sbjct 418617 GTTCAGGGGAAAGTTG-TGGAAAGGCCACAACACATGTTGATGAGAGTTTCTGTTGGGAT 418675 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 || | | || ||||| |||| | | ||||||| || |||||| ||||| ||| Sbjct 418676 CCACAAGAATGATATTGAATCTGCCATCAGGACATACCACTTGATGTCTCAAGGATGGTT 418735 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || | ||||| || || |||||||| || ||||| ||||| Sbjct 418736 CACTCATGCTTCTCCAACACTTTTTAATGCTGGAACTCCAAGGCCCCA 418783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583235880182320