Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq179 145 8e-30 >seq179 Length=2504955 Score = 145 bits (160), Expect = 8e-30 Identities = 368/547 (67%), Gaps = 12/547 (2%) Strand=Plus/Minus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 ||||||| | | |||| |||| |||||||| ||| || |||||| | | ||||| Sbjct 2366991 GTACCCGCAAATCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGA 2366932 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTT 59692 | |||| ||| | || || | ||||| || | | ||||||| |||| || Sbjct 2366931 GGTTGATCTCTCTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGAGAAGCACTT 2366872 Query 59693 CATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGA 59752 || ||| | || ||||| || || || || || || || |||| ||| | | Sbjct 2366871 TATTAAGCACATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGC 2366812 Query 59753 CATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG 59810 | | || ||| ||||| |||||| |||| ||||| || |||| |||| | ||| Sbjct 2366811 C--GGACGGTTCATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAG 2366754 Query 59811 -TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAA 59869 ||| || |||| ||||||||| |||| |||| || || | || | | |||| Sbjct 2366753 ATCGC-CATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAA 2366695 Query 59870 GGATCCGGAAGAGAAGG-CTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAA 59927 |||| | |||||||||| | ||| |||||| || || || || || ||| | || | Sbjct 2366694 GGATTCTGAAGAGAAGGACAGGT-TGTTCCACGCGATTGATACTGTGCCCTGT-GTGGAG 2366637 Query 59928 CAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCT 59986 | || || | ||||| | | ||||| || || | | |||||| || | ||| | Sbjct 2366636 AAGAAGGCTAAGTGGGCTCTCCGCTGGATTGATGGCTCG-GAATCATTCGCTGAGCGTTT 2366578 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 | || ||||| || || || || ||||||||||| || || ||||| || ||||| Sbjct 2366577 GTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTG 2366518 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 ||| |||||||| || || |||||||| || ||||| || ||| |||| || || || Sbjct 2366517 GCTGAAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGA 2366458 Query 60107 CGAGGGC 60113 |||||| Sbjct 2366457 TGAGGGC 2366451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548501364277920