Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq179 174 2e-38 seq256 91.5 2e-13 seq1421 87.8 2e-12 seq3415 86.0 7e-12 seq1770 86.0 7e-12 seq876 86.0 7e-12 seq869 86.0 7e-12 seq465 84.2 2e-11 seq1895 82.4 8e-11 seq1576 82.4 8e-11 >seq179 Length=2504955 Score = 174 bits (192), Expect = 2e-38 Identities = 361/530 (68%), Gaps = 8/530 (2%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| ||||||| ||||| |||||||| || || | || ||||| || || Sbjct 2366446 TGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCG 2366505 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 ||||| |||| ||| || |||||||| || || ||||||||| || || ||||| Sbjct 2366506 CGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAA 2366565 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942 |||||||| | | || | ||||| | | | | | ||||| ||||||| Sbjct 2366566 GCAAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCCATCAATCCAGCGGAGAGCCCAC 2366625 Query 74943 TCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTC 75001 | ||| || | | | | ||||| |||||||| ||||| ||||| | || ||||||| Sbjct 2366626 TTAGCCTT-CTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTC 2366684 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 ||| | |||||||| | | || | || ||| |||| |||| || || || ||| Sbjct 2366685 TTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTCAGAGTGGATATTCTC 2366744 Query 75062 GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGA 75118 | || ||| |||| | |||| || | |||||||| |||| ||| || ||||| ||| Sbjct 2366745 GATGG-CGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAACCTGGACCTCCTTCATGA 2366803 Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 | | | | ||| |||||||| ||||||||||| |||||||| ||||| || |||| Sbjct 2366804 ACCGTCC--GGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAAAAAGGCAAGTAT 2366861 Query 75179 CATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGC 75238 || |||||||| ||| ||| || || ||||| | || ||| | Sbjct 2366862 GTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCACTGACGGAGATCCTGAGA 2366921 Query 75239 CAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 | ||||| |||||| ||||||||||| | | | || || ||||||| Sbjct 2366922 GAGATCAACCTCCTCCGCCGTCCAGAAAGACGCGACGGCTTTCTTGTACA 2366971 >seq256 Length=501038 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||| ||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 295272 GGTGGGGCTTGAACCCACGACTTTTGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 295213 Query 80228 CGAGA 80232 | ||| Sbjct 295212 CAAGA 295208 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| | |||||||||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 293693 GGTGGGACTTGAACTCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 293634 Query 80228 CGAGA 80232 | ||| Sbjct 293633 CAAGA 293629 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||||||||||||| ||| ||||||||||||||| |||||| ||||| || Sbjct 315983 GGTGGGGCTTGAACTCACGACTTTCGGCTCATAAGACCAACACTTTAACCAACTGAGCTA 315924 Query 80228 CGAGA 80232 | ||| Sbjct 315923 CAAGA 315919 >seq1421 Length=9127415 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3882234 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3882293 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 3882294 TGAGCTACGAAAGCA 3882308 >seq3415 Length=734897 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||| ||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct 164972 GGTGGGGCTTGAACCCACAACTTTTGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 165031 Query 80228 CGAGA 80232 | ||| Sbjct 165032 CAAGA 165036 >seq1770 Length=3924893 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3678289 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3678348 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3678349 TGAGCTATGAAAGC 3678362 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3764442 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3764383 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3764382 TGAGCTATGAAAGC 3764369 >seq876 Length=2251038 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 2208890 GGTGGGGCTTGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 2208831 Query 80228 CGAGA 80232 | ||| Sbjct 2208830 CAAGA 2208826 >seq869 Length=1203693 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 869765 GGTGGGGCTTGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 869706 Query 80228 CGAGA 80232 | ||| Sbjct 869705 CAAGA 869701 >seq465 Length=3338498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 2531750 GGTGGGGCTTGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 2531691 Query 80228 C 80228 | Sbjct 2531690 C 2531690 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| | |||||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 2529131 GGTGGGACTTGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 2529072 Query 80228 CGAGA 80232 | ||| Sbjct 2529071 CAAGA 2529067 >seq1895 Length=2141189 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1261535 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1261476 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 1261475 TGAGCTACGAGAGCA 1261461 >seq1576 Length=5940209 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3564857 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 3564798 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3564797 CTGAGCTATGAAAGC 3564783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192620196400