Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1576 87.8 1e-12 >seq1576 Length=5940209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || || || || || || |||| || |||||| || Sbjct 2986006 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2985947 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| |||||| ||||||||||| | || || | Sbjct 2985946 GACACTATTGACAAT--GTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATC 2985889 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || || | |||| | || ||||||||| Sbjct 2985888 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGGCCGATTACA 2985829 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | |||||||| | |||||| | || || Sbjct 2985828 ACATCCAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTTGAGGGGTGG 2985780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355847575884486