Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq268 86.0 5e-12 seq1361 84.2 2e-11 >seq268 Length=6919517 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| ||||| || ||||| |||||||| || ||||| | || || Sbjct 3332058 ACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCGGCTAGGGTTCGGCCATCCTCG 3332117 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| ||||| || || | | |||||| |||| || | | ||||| ||| Sbjct 3332118 AGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGAGGGATTCCTTCTTTATCCTGA 3332177 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCACCGTGATACTT 39252 || ||| || | || | | ||||| ||| || || || | |||||| || Sbjct 3332178 ATCTTCGCCTTCACGTTCTCAATTGTATC---CGAGCTTTCAACTTCTAGGGTGATAGTT 3332234 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| ||||| || ||||||||||| Sbjct 3332235 TTCCCAGTCAGAGTTTTCACGAAGATTTGCAT 3332266 >seq1361 Length=2134540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || | ||||||||| ||||| ||| || || || || || || ||| Sbjct 1710884 CCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 1710825 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| | | || ||||||||||| || ||||| || | |||||| ||||| | || Sbjct 1710824 AGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 1710765 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| | | || || | | | | ||||| ||| || Sbjct 1710764 ATGCCTTCCTTGTCC-TGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAAC 1710706 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || ||||| |||||||| ||||| Sbjct 1710705 CTCCAGTGTGATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCAT 1710658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429527706472634