Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq179 118 1e-21 seq656 109 8e-19 seq418 105 9e-18 seq3197 87.8 2e-12 seq276 84.2 3e-11 >seq179 Length=2504955 Score = 118 bits (130), Expect = 1e-21 Identities = 361/556 (65%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || ||||| ||||| || || | || ||||||| || || || || || || | Sbjct 2366428 AAGCATGCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGAC 2366487 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||| || || || ||||| ||||| ||||| || ||| || || ||| Sbjct 2366488 AACCCCGGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAG 2366547 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || || || || ||||| || | | ||| || | || | || | Sbjct 2366548 AAGATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAA--TGATTCCGAGCCAT 2366605 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || | ||||| | ||||||||||| ||||| |||| || || || || | Sbjct 2366606 CAATCCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGT 2366665 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 || | || || || | ||| || | |||||| || | | |||||| |||| Sbjct 2366666 GGAACAACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACA 2366725 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || ||||| ||||| || || || ||||| ||||||||||| | ||| || | | Sbjct 2366726 TCTCAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAA 2366785 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| |||||| | || ||| | || | |||||| || || || || || | Sbjct 2366786 CCTGGACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGG 2366845 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 ||||||| || | || || |||||||| | || |||| ||| || || | ||| | Sbjct 2366846 CAAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCACT 2366905 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | || ||| | || | ||| || || || || ||||| || || || | ||||| | Sbjct 2366906 GACGGAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACGCGACGGCTTTCT 2366965 Query 48676 TATACATATTCCATAT 48691 | ||||| | ||| || Sbjct 2366966 TGTACATCTCCCAGAT 2366981 >seq656 Length=2434700 Score = 109 bits (120), Expect = 8e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||||||| ||||| || | ||||| || ||||| ||| ||||||| Sbjct 848688 CTCTGTTTCATATTGCGTATAGAGTTTGTTGAATTCTTCACCCCAGCAATCTGCCAATCC 848747 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 |||| | |||||||| || | ||||||||| | |||| | | || |||| | ||||| Sbjct 848748 AGGGGACTCATTTGGACAAAACAATGACCATTGCCCAT-TGCTTTGTACTCTCTCCATAA 848806 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||||| ||| |||||| || ||||| |||| || ||| ||||| Sbjct 848807 ATAGATCAGGTACCCAGAGAGCATAGAAAAGATCCCGGGCTCGATGCTCTTC 848858 >seq418 Length=2515040 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||||||||||| ||||| || |||||||| || ||||| ||| ||||||| Sbjct 419607 CTTTCTTTCATATTCTGTATAAAGTTTCTCAAATTCTTCACCCCAGCAATCTGCCAATCC 419548 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| |||||||| || | || ||||| | |||| || |||| || |||||| Sbjct 419547 AGGTGCCTCATTTGGACAAAATAAAGACCACTGCCCATTACTCTGCACTCTTTCCATAAA 419488 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| |||||| ||| |||||||| | | ||||||||| Sbjct 419487 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCTCGTGCACGATGTTCTTC 419437 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||||||||| || | |||||| || |||| ||| | || | | |||||||| ||| || Sbjct 419178 ACCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCC 419119 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||| || ||| ||| ||||| ||| | || || || ||| | || Sbjct 419118 ATTGGATGTTCCATTCGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGA 419059 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||| || || ||| |||| ||| || || | ||||| || || Sbjct 419058 GACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATAT 418999 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||||| || || ||||| ||||| | ||| || |||||| Sbjct 418998 ACCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 418956 >seq3197 Length=603451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| ||||| || | ||||| || || | ||| | || | | ||| |||| ||| || Sbjct 139560 ACCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTACCATAGGAACAATTCC 139501 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||| |||||||||||| ||||||||| ||| | || |||||||| | || Sbjct 139500 ATTGGATGCCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGAATATTGTGCACAGA 139441 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || ||||||||||| || |||| ||| || || | ||||| || || Sbjct 139440 AATACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATAT 139381 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || || || ||||| | |||||| |||||| Sbjct 139380 GCCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 139338 >seq276 Length=5621588 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 ||| | |||||||||| |||| || | ||||| || ||| | ||| |||||| Sbjct 1862770 TCTTTGTTTCATATTGCATATAGAGTTTGTTGAATTCTTCACCCTAGCAATCTGCCAATC 1862711 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATA 78014 ||||| | |||||||| || | ||||||||| | |||| ||| || |||| | |||| Sbjct 1862710 CAGGGGACTCATTTGGACAAAACAATGACCATTGCCCAT-TTCTTTGTACTCTCTCCATA 1862652 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || | |||||||| ||| ||| | || ||||| |||| | ||| ||||| Sbjct 1862651 AATAAATCAGGTACCCAGAGAATATAGAAAAGATCCCGGGCACGATGCTCTTC 1862599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694639120275520