Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq179 123 4e-23 seq3197 109 8e-19 seq656 109 8e-19 seq418 96.9 5e-15 >seq179 Length=2504955 Score = 123 bits (136), Expect = 4e-23 Identities = 362/556 (65%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || ||||| ||||| || || | ||| ||||||| || || || || || || | Sbjct 2366428 AAGCATGCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGAC 2366487 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | ||| ||||| || || |||||||| ||||| ||||| || ||| || || ||| Sbjct 2366488 AACCCCGGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAG 2366547 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTAT 46804 || || || || ||| || || || | | | ||| || | | | | | || Sbjct 2366548 AAGATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCC--AT 2366605 Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 |||||| | ||||||| | |||||| |||| ||||| |||| || || || || | Sbjct 2366606 CAATCCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGT 2366665 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 || | || || || ||| ||| || | || || || | | |||||| |||| Sbjct 2366666 GGAACAACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACA 2366725 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 | || || || || || || || || ||||| ||||||||||| | || || | || Sbjct 2366726 TCTCAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAA 2366785 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 ||| ||||| | || ||| | | | |||||| || || || || || | Sbjct 2366786 CCTGGACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGG 2366845 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT 47104 ||||||| || | || || |||||||| | || || |||| || || | ||| | Sbjct 2366846 CAAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCACT 2366905 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | || ||| | || | ||| || || || || |||||||| ||||| | ||||| | Sbjct 2366906 GACGGAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACGCGACGGCTTTCT 2366965 Query 47165 TATACATATTCCATAT 47180 | ||||| | ||| || Sbjct 2366966 TGTACATCTCCCAGAT 2366981 >seq3197 Length=603451 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| ||||| || | ||||| ||||| | ||| | || | | ||| |||| ||| || Sbjct 139560 ACCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTACCATAGGAACAATTCC 139501 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||| |||||||||||| ||||||||| ||| ||||||||||| | ||| Sbjct 139500 ATTGGATGCCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGAATATTGTGCACAGA 139441 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| |||| |||||| || | || ||||| || Sbjct 139440 AATACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATAT 139381 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || ||||| || ||||| | |||||| |||||| Sbjct 139380 GCCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 139338 >seq656 Length=2434700 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| ||||| || | ||||| ||||| | ||| | || | | ||| |||| ||| || Sbjct 849133 ACCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTAGCATAGGAACAATTCC 849192 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| ||| ||||| ||||| | ||| Sbjct 849193 ATTGGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGGATATTGTGCACAGA 849252 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||| |||| |||||| || | || ||||| || Sbjct 849253 AACACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATAT 849312 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || ||||| || ||||| | |||||| |||||| Sbjct 849313 GCCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 849355 >seq418 Length=2515040 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 || ||||||||||| |||||| | |||||||| || ||||| ||| |||| || Sbjct 419607 CTTTCTTTCATATTCTGTATAAAGTTTCTCAAATTCTTCACCCCAGCAATCTGCCAATCC 419548 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| ||||| | || ||||||| |||| || || | || |||||| Sbjct 419547 AGGTGCCTCATTTGGACAAAATAAAGACCACTGCCCATTACTCTGCACTCTTTCCATAAA 419488 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| |||||||| | | | ||||||| Sbjct 419487 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCTCGTGCACGATGTTCTTC 419437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903939877760