Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq33599 102 8e-17 >seq33599 Length=161954 Score = 102 bits (112), Expect = 8e-17 Identities = 300/459 (65%), Gaps = 5/459 (1%) Strand=Plus/Minus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || |||||||| || || ||||| |||| ||| | || || || || | |||| Sbjct 157763 CACGCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAAC 157704 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| || || || || | ||| ||||| || || |||||| ||||| Sbjct 157703 CCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAG 157644 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || ||||| || | || || || | || || || ||| | | || | | | Sbjct 157643 ATCCCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGAT---TCCGAGCCATCA 157587 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| | |||||| || || | || | || || || || || || | Sbjct 157586 ATCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGG 157527 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || || | || || || | || | || || || || | || || |||||||| Sbjct 157526 AACAACCTATCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATC 157467 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTTCCGCTAT 17322 || ||||| || ||||| ||||| ||||| ||||| ||||| ||| || || ||||| || Sbjct 157466 TCAGAGTGGATATTCTCGATGGCGATCTGGAATCCATAAAACGCA-CGCGCCTCCGCAAT 157408 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 || || ||| ||| ||| | || ||||| || |||||||||||| ||||| Sbjct 157407 CTGGACCTCCTTCATGAACCGTCCGGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGC 157348 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 ||||| || | || |||||||| || | || ||||| Sbjct 157347 AAAAAAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGTC 157309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517044874632000