Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq33488 125 8e-24 >seq33488 Length=63435 Score = 125 bits (138), Expect = 8e-24 Identities = 261/386 (68%), Gaps = 17/386 (4%) Strand=Plus/Plus Query 24322 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 24381 ||||| | | |||||| |||| |||||||| | || || || ||| || || | Sbjct 35333 GAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGGAACAGTCTAT 35392 Query 24382 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA- 24440 | || |||| ||||| | || | || | ||| || || ||||| || || || Sbjct 35393 TCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATCTCGGATGGAG 35452 Query 24441 ---ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 ||||| || ||||| ||||| || |||||||| | |||||||| | ||| || Sbjct 35453 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGAGACCTGGACC 35512 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 ||| | || | ||||| ||||| || || |||||| ||| ||||| || Sbjct 35513 TCTTT-CATAG--GTTCT-CTAAA---------ACAATGCCGTCAGAGGCGGCAAAGAAA 35559 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 || | || || || || || | ||| ||||| || || || ||| ||| | ||||| Sbjct 35560 GCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTGAGG 35619 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || | ||| | |||||||||||| | ||||| || || ||||| || || || ||||| Sbjct 35620 TCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 35679 Query 24678 TTCCAGATGTCATGATATTGAATTGG 24703 | ||| || ||| | ||||| ||||| Sbjct 35680 TCCCAAATCTCAGGGTATTGGATTGG 35705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593147174352000