Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq34240 100 2e-16 seq33279 86.0 5e-12 >seq34240 Length=378565 Score = 100 bits (110), Expect = 2e-16 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 29049 ATTGCC--GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAAC 29106 |||||| || ||||||||| | ||| ||||| || ||||| || ||||| ||||||| Sbjct 153685 ATTGCCAGGACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAAC 153626 Query 29107 AACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACA 29166 | |||||||| | ||| |||| |||||||| || ||||||||||| || |||||| Sbjct 153625 AGTTGGAAGATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACC 153566 Query 29167 TGGTGTT 29173 |||| || Sbjct 153565 TGGTTTT 153559 >seq33279 Length=59633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || ||||| ||||| ||| ||| |||| | | Sbjct 12229 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 12170 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| |||||| || |||||||| | ||| |||||| Sbjct 12169 GACACAATTGATAACGTGAAGGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 12110 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || |||||||| || || || || ||||| ||| | || | || |||||||| Sbjct 12109 CAGAGGCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTTGCTGATTACAAC 12050 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| ||||| ||||| ||||| Sbjct 12049 ATTCAGAAGGAGTCTACCCTTCATTTGGTG 12020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427931945297000