Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq33714 131 3e-25 seq31522 111 2e-19 seq33784 107 3e-18 >seq33714 Length=161502 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || |||||||| ||||| || || ||| | ||| |||| ||| | Sbjct 22109 ATGCAGATCTTTGTCAAAACACTAACTGGCAAGACCATCACTCTTGAGGTTGAGAGCTCA 22168 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || ||||||||||| ||||| || || || ||||| Sbjct 22169 -GATACCATTGACAATGTGAAGGCTAAGATTCAAGATAAGGAAGGGATTCCCCCAGATCA 22227 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| ||||| || | || ||| | || || ||| ||| || || Sbjct 22228 ACAGAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTAGCAGACTACAA 22287 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||||||| || || | ||| | || | ||| | || ||||| || Sbjct 22288 TATCCAAAAAGAGTCCACCCTCCATCTTGTCCTCCGTCTGCGTGGTGGCAT 22338 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || || ||||| ||| | ||| |||| | Sbjct 21425 ATGCAGATCTTTGTAAAGACTCTTACTGGAAAGACTATTACTCTCGAGGTTGAGAGTTCT 21484 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| |||| || || || |||||||| ||||| || || || ||||| Sbjct 21485 GATACCATTGATAATGTTAAGGCA-AAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 21543 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||| |||||||||||||| || | || ||| | || ||| | | ||| ||||| Sbjct 21544 ACAGCGGCTGATTTTTGCAGGAAAGCAGCTTGAAGATGGCCGTACACTTGCAGACTATAA 21603 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || || || | || | || | ||| | || |||||||| Sbjct 21604 TATCCAAAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGTGGTGGTAT 21654 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| |||| || ||||| ||||| || || || | ||| |||| ||| | Sbjct 21881 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 21940 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| || || ||||| || Sbjct 21941 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGACCA 21999 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| ||||| || | || ||| | || || | | ||| || || Sbjct 22000 ACAGAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAA 22059 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || | ||| | ||| | || |||||||| Sbjct 22060 CATCCAAAAGGAGTCTACCCTCCACCTTGTTCTTCGTCTGCGTGGTGGTAT 22110 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| |||| || ||||| ||||| || || || | ||| |||| ||| | Sbjct 21653 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCA 21712 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||| ||||| || || || ||||| Sbjct 21713 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 21771 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || |||||||| ||||| || | || ||| | || || | | ||| || || Sbjct 21772 ACAGAGACTGATTTTTGCTGGAAAGCAGCTTGACGATGGACGCACTCTTGCAGACTACAA 21831 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||||||| || || | ||| | || | ||| | || |||||||| Sbjct 21832 TATCCAAAAAGAGTCCACCCTCCATCTTGTCCTCCGTCTGCGTGGTGGTAT 21882 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || || ||||| || || ||| | || |||| ||| Sbjct 22628 ATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACTCTTGAAGTTGAGAGCTCG 22687 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || ||||||||||| ||||| || || || ||||| Sbjct 22688 -GATACCATTGACAATGTGAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 22746 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||| |||||||| ||||| || | || ||| |||| ||| | | ||||| || Sbjct 22747 ACAAAGGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAA 22806 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || | ||| | || | || | || ||||| || Sbjct 22807 CATCCAAAAAGAGTCCACCCTCCATCTTGTCCTCCGCCTGCGTGGTGGCAT 22857 >seq31522 Length=43835 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| | || || || || || ||||| || || |||| ||||| || | Sbjct 35175 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAAACGATCACCCTAGAAGTTGAAAGCTCA 35234 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || | || ||| ||||| ||||||||||| || || || ||||| Sbjct 35235 -GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGATCA 35293 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || |||||||| ||||| | |||||| | || || | | ||||| | Sbjct 35294 ACAGCGCTTGATATTTGCAGGGAAACAGCTTGAGGATGGGCGCACTCTTGCCGATTACAG 35353 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| || || ||||||||| | ||| | ||| | ||| | || ||||| Sbjct 35354 TATCCAGAAGGAATCAACTCTCCATCTTGTTCTCCGTCTTCGTGGTGG 35401 >seq33784 Length=161669 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| ||||||| || || || ||| |||| | || ||| | Sbjct 104656 ATGCAGATCTTTGTCAAGACCTTAACAGGGAAGACCATCACTTTAGAAGTAGAGAGCTCA 104715 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| || ||||| ||||| |||||||| || || ||||| Sbjct 104716 -GATACTATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCA 104774 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || || ||||| || || || | || || | || || | | |||||||| Sbjct 104775 ACAAAGACTGATCTTTGCTGGTAAGCAGCTTGATGACGGGCGTACCCTTGCTGATTATAA 104834 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| |||||||| | || | || | ||| | || ||||| || Sbjct 104835 CATTCAAAAGGAATCAACACTCCACCTTGTCCTTCGTCTGCGTGGTGGCAT 104885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754725096320000