Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq31522 96.9 5e-15 seq34240 95.1 2e-14 seq33714 89.7 8e-13 seq32963 84.2 3e-11 >seq31522 Length=43835 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || |||||||| ||||| ||||| | || |||| || ||| || Sbjct 29154 ACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCGGCTAGGGTTCGGCCATCCTCG 29095 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | ||||| || || |||||||| || |||||||| ||||||||||||||| | || || Sbjct 29094 AGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGAGGAATTCCTTCTCTGTCCTGA 29035 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||||| ||||| |||||||| ||||| ||||| Sbjct 29034 ATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTTC 28975 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || | ||||| | || |||||||| Sbjct 28974 CCAGTCAGAGTTTTCACAAAGATTTGCAT 28946 >seq34240 Length=378565 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || |||||||| || |||| || | || ||||| || || || ||||| Sbjct 153541 GTTCCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCA 153600 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || || ||||| ||||||||||||| ||| |||||||| || Sbjct 153601 GCCAGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGG 153660 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 153661 GGGATACCTTCTTTGTCCTG 153680 >seq33714 Length=161502 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || |||| |||||| | | ||| || | || |||||||||||||||| ||| Sbjct 21834 ATATTGTAGTCTGCAAGAGTGCGTCCATCGTCAAGCTGCTTTCCAGCAAAAATCAGTCTC 21775 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||||||| |||||||| Sbjct 21774 TGTTGATCTGGAGGAATTCCTTCCTTATCTTG 21743 >seq32963 Length=86082 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || |||| |||||||| || ||| || | || ||||||||||||||||| ||| Sbjct 68248 ATATTGTAGTCTGCAAGAGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAAAATCAACCTT 68189 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 |||||||| || || |||||| Sbjct 68188 TGCTGATCAGGTGGGATTCCT 68168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742807038208000