Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq33157 136 3e-27 seq34042 131 1e-25 seq34050 118 7e-22 seq33279 109 4e-19 seq33260 93.3 3e-14 seq34423 91.5 1e-13 >seq33157 Length=145522 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||||||| | |||| |||||||| ||||||||||| | | Sbjct 122128 CCACCGCGGAGACGAAGCACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCC 122069 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| |||| |||||| || ||||| |||||||||||||||||| || Sbjct 122068 AAGGTCCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCGGGTGGG 122009 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| || || ||| | || | | || | |||| || || || Sbjct 122008 ATTCCCTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACC 121949 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || || || || || ||||| |||||||| |||||||||||| Sbjct 121948 TCCAGGGTTATCGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCATC 121901 >seq34042 Length=367129 Score = 131 bits (144), Expect = 1e-25 Identities = 174/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| ||| | || ||||| || | || || ||||| | ||| || ||||| ||||| Sbjct 85708 TTCTTCGCA-CCACCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTT 85766 Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272 |||||||| || ||| |||| || | ||||||||| ||||| |||||||||||||| Sbjct 85767 GTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTG 85826 Query 34273 GT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 || || |||| | || |||||||| |||||| ||| | || | | || | || | Sbjct 85827 GTCCGGCGGG-ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCCG 85885 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| || || | ||||| || || || || || || ||||||||||||||||| Sbjct 85886 ACGATTCAACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 85943 >seq34050 Length=239353 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||||| ||| | || || ||||| ||||||||||||| || |||| Sbjct 44117 AGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTACGG 44176 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | ||||||||| || || ||||||| ||| ||||| || | || ||| Sbjct 44177 CCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCC 44236 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | | | | || | ||||| ||| || |||| ||| Sbjct 44237 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTG 44296 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||||||||| ||||| || |||||||| Sbjct 44297 ATGGTTTTCCCGGTGAGAGTCTTCACGAAAATCTGCAT 44334 Score = 114 bits (126), Expect = 8e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||||||||||| || | || ||| ||||| || |||||||||| Sbjct 44335 TCCTCCACGGAGCCTCAGCACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGC 44394 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | |||||| || ||||| || |||| ||||||||| ||| Sbjct 44395 TAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGG 44454 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | |||| | || | ||| || Sbjct 44455 GATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCTATGGTGTCAGAGCTTTCAAC 44514 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| || || || |||||||| || ||||| || |||||||||||| ||| Sbjct 44515 CTCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCATCCCTC 44567 Score = 104 bits (114), Expect = 2e-17 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||| || | || ||| |||| || | |||||| || |||||| Sbjct 44600 TCCTTCTGGATATTGTAATCCGCTAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 44659 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||||||| ||||||||| | |||| | | ||||||||| ||| || ||||| | | Sbjct 44660 ATGAGCCTCTGCTGGTCTGGCGGG-ATTCCCTCCTTGTCCTGGATC-TTAGCTTTCACGT 44717 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | |||| ||||| ||| || |||| || || || |||||||| || ||||| | Sbjct 44718 TGTCAATCGTATCGGAGCTTTCAACCTCCAAGGTAATCGTCTTGCCGGTTAGGGTTTTAA 44777 Query 34377 CAAAGATCTGCATCGCTC 34394 | |||||||||||| ||| Sbjct 44778 CGAAGATCTGCATCCCTC 44795 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||| |||| || ||| |||| || | ||||| || ||||| Sbjct 44828 TCCTTCTGGATATTGTAATCGGCGAGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAG 44887 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||||||||| | |||| | || |||||| || ||||| ||| | || Sbjct 44888 ATCAGCCTCTGCTGGTCCGGCGGG-ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATT 44946 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||||| || | || || || |||||||| || |||||||| Sbjct 44947 GTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCAC 45006 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 45007 AAAGATCTGCATC 45019 >seq33279 Length=59633 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| |||||||| |||| || |||| |||| Sbjct 12930 AGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCGTCT 12989 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || |||| |||||||| ||| | | ||||||||| Sbjct 12990 TCGAGCTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 13049 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| ||||| || | |||||||| Sbjct 13050 TGGATCTTAGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTC 13109 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || ||||||||||||||||||||| Sbjct 13110 TTGCCGGTTAGGGTTTTCACAAAGATCTGCATC 13142 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| ||| ||||| |||||||| |||| ||| |||| | || Sbjct 12474 AGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGGCCATCC 12533 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | || ||||||||| ||| | | ||||||||| Sbjct 12534 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 12593 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || | || ||||| Sbjct 12594 TGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTC 12653 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||| |||||||| |||||||||||| Sbjct 12654 TTTCCGGTGAGGGTTTTCACGAAGATCTGCATC 12686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| || ||||| |||| ||| |||| | || Sbjct 12702 AGCACCAAGTGGAGAGTTGACTCCTTCTGGATATTGTAATCGGCCAGGGTACGGCCATCC 12761 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | || ||||||||| ||| | | ||||||||| Sbjct 12762 TCAAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 12821 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| ||||| || | ||||| || Sbjct 12822 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTC 12881 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||| ||||| || |||||||||||| Sbjct 12882 TTTCCGGTGAGGGTTTTGACGAAGATCTGCATC 12914 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| ||||||| || | ||| || ||||| |||||||| || | Sbjct 12003 CCACCCCTCAGCCTGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 12062 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || |||| |||||| || ||| Sbjct 12063 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGA 12122 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || ||||| || ||| ||| | | | || | |||| ||| || Sbjct 12123 ATTCCTTCTTTGTCCTGGATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCCACC 12182 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || |||||||||||||| Sbjct 12183 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 12229 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| |||||||| || | ||| |||| | || Sbjct 12246 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCC 12305 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | || |||||||| ||| | | ||||||||| Sbjct 12306 TCAAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 12365 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || |||| ||||| || Sbjct 12366 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCCAGGGTGATTGTC 12425 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| |||||||| ||||||||||| Sbjct 12426 TTGCCCGTGAGGGTTTTCACGAAGATCTGCAT 12457 >seq33260 Length=58559 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| || || || ||||||||||| | Sbjct 33973 CCGCCGCGGAGGCGAAGGACGAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCA 34032 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || |||| || | |||||| || ||||| ||||| ||||||||||| | |||| Sbjct 34033 AGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGG 34092 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 34093 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCCGATGACTCCAC 34151 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || || ||||| ||||||||||| Sbjct 34152 CTCTAGGGTTATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 34199 >seq34423 Length=256361 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || |||| |||| || | ||| || || ||||| Sbjct 118984 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAA 119043 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||||||||| ||| | | |||||||| ||||| ||| | | Sbjct 119044 GATCAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 119103 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| || || || | |||||||| || ||||| || ||||| || Sbjct 119104 GTCAATGGTGTCGGAACTCTCCACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTGAC 119163 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 119164 GAAGATCTGCATC 119176 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || ||||| | ||| || ||||| ||||| || || Sbjct 118261 GAAACCCCCACGGAGACGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTATAATC 118320 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || | | || ||||| ||||| ||||| ||||| | || ||||||||| Sbjct 118321 AGCAAGAGTCCTTCCATCTTCCAATTGCTTCCCTGCAAAAATCAACCTCTGCTGGTCTGG 118380 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 ||| | || ||||||||| ||||| ||| | || | |||| | || | || Sbjct 118381 GGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATTGTCTATGGTGTCCGAGCTCTC 118440 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || ||||| || ||||| || |||||||| Sbjct 118441 AACCTCAAGAGTGATGGTTTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 118491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322767242144000