Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq34050 98.7 9e-16 seq33753 89.7 5e-13 seq33599 86.0 6e-12 >seq34050 Length=239353 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || |||||||| | ||||||||| ||||||||||| || || || | ||| || Sbjct 39874 TTCTGATATTCTCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGTAAGCTGATCAGC 39815 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAAC 16060 ||||| ||||||| ||| ||||| || || ||| |||| |||||||||| | Sbjct 39814 TCCATCCAATCAAACGGA--TTTTGGAC-ATTGTACACTTTACTGCATCCCAATGCATCT 39758 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 | |||||||| |||||||||||||| || || |||| | ||| | |||||||| Sbjct 39757 AGCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATTCC 39702 >seq33753 Length=114126 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || |||||||| | ||||||||| ||||||||||| || || || | ||| || Sbjct 60115 TTCTGATATTCTCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGTAAGCTGATCAGC 60056 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAAC 16060 ||||| ||||||| ||| || || || || ||| |||| |||||||||| | Sbjct 60055 TCCATCCAATCAAACGGA--TTCTGGAC-ATTGTACACTTTACTGCATCCCAATGCACCT 59999 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 | |||||||| |||||||||||||| || || |||| | ||| | ||||| || Sbjct 59998 AGCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATCCC 59943 >seq33599 Length=161954 Score = 86.0 bits (94), Expect = 6e-12 Identities = 480/757 (63%), Gaps = 21/757 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || |||||||| | ||||||||| ||||||||||| || || || | ||| || Sbjct 158054 TTCTGATATTCTCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGTAAGCTGATCAGC 157995 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCATCCCAATTCCAACA 16061 ||||| ||||||| ||||| | | ||| ||| |||| |||||||||| | | Sbjct 157994 TCCATCCAATCAAACGGATTCT--GGACATTATACACTTTACTGCATCCCAATGCACCTA 157937 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 |||||||| |||||||||||||| || || |||| | || | ||||| || | | Sbjct 157936 GCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGGTCCCCATTCATCCCCACCA 157877 Query 16122 ATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA-- 16178 | |||||| | || || | || | | || |||| ||| ||||||| | Sbjct 157876 A-AGCACAGGGAAGCGCATCACACACGAATTCCCTCTCAATATCAACAGCTTCAACCACA 157818 Query 16179 --TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACA 16236 | | || | || | | | ||| | || | | | | | || || Sbjct 157817 AGTGACTTCACGCGCTCCTC-GCTCAACTTCCTCCTCAACA---GCCCATAGAGCATGCA 157762 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||||| || ||||| || || || | || ||||| || || || | | || Sbjct 157761 CGCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCC 157702 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| | || || ||||| | ||| |||||||| ||| ||||| ||||| || Sbjct 157701 CGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGAT 157642 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttttta-ctttcta 16415 || ||||| || || || | ||| |||||| || | | ||| | | || | Sbjct 157641 CCCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATG----ATTCCGAGCCATCAA 157586 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 |||| |||||| || || || | | |||||| || | || || || | | Sbjct 157585 TCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGA 157526 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | || || || |||| ||| || ||||| || | || | ||| ||||| | Sbjct 157525 ACAACCTATCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCT 157466 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCTAGCTTCGGATATT 16594 | || || |||||||| || || ||||| || |||||||| ||| | || || | || Sbjct 157465 CAGAGTGGATATTCTCGATGGCGATCTGGAATCCATAAAACGCA-CGCGCCTCCGCAATC 157407 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || |||| | | || | || || ||| || || ||| || ||| Sbjct 157406 TGGACCTCCTTCATGAACCGTCCGGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGCA 157347 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT 16691 ||||| ||||||| ||| |||||||| | || |||| Sbjct 157346 AAAAAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGT 157310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462064519640000