Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq33140 96.9 7e-15 >seq33140 Length=116131 Score = 96.9 bits (106), Expect = 7e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||| ||||| ||||||||| || |||| ||| || ||| | || | Sbjct 77989 AGACTTTGACTATGATTACTTTGGTTTCAAAACACTTGAGAGATCTTACCTCTTAAAGGT 77930 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | | ||||| | || || | ||||| ||||||||| |||| ||||| ||||| || Sbjct 77929 TCAAGGCAAAGTTGTTGAGAGGCCACAGCATATGTTGATGAGAGTTGCTGTTGGGATCCA 77870 Query 248928 CAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 ||||||||| || || | | ||| || |||||||| |||| | || | ||| | Sbjct 77869 CAAGGATGATATTGA-ATC-TGCCATCAAGACGTACCATTTAATGTCTCAAAGATGGTTC 77812 Query 248986 ACACATGCCACACCGACGCTCTTCAA 249011 |||||||| | || || || || || Sbjct 77811 ACACATGCATCCCCAACTCTTTTTAA 77786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072701559283200