Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq33157 118 8e-22 seq34042 116 3e-21 seq33714 114 1e-20 seq34423 111 1e-19 seq34050 111 1e-19 seq33260 109 4e-19 seq33279 107 2e-18 >seq33157 Length=145522 Score = 118 bits (130), Expect = 8e-22 Identities = 157/217 (72%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||| ||||| ||||||||||| || || |||| ||| Sbjct 122110 ACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGGCCGTCCTCC 122051 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | |||||| |||||||| || | ||||||||||| | Sbjct 122050 AGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGA 121991 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| ||||||||||| ||| |||||||| Sbjct 121990 ATTTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAGGGTTATCGTCTTC 121931 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT-GTTGCCT 45343 ||||| || || ||||| ||||| ||||| |||||| Sbjct 121930 CCCGTGAGGGTTTTCACGAAGATCTGCATCTTTGCCT 121894 >seq34042 Length=367129 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 85740 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 85799 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | |||||| ||||| || || | || ||||||||| || || Sbjct 85800 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTT 85859 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | ||||| || ||||| | ||| |||||||| ||||| Sbjct 85860 TGCCTTCACATTGTCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCGT 85919 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| |||||||||||||| ||||| || Sbjct 85920 CAGGGTCTTCACAAAGATCTGCATTTT 85946 >seq33714 Length=161502 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||||| | ||||| || ||||| ||||||||||||||||||||| Sbjct 23082 CCCCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 23023 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| | | || ||||| ||||| || || || ||||| ||||||||||| ||||| Sbjct 23022 AGTGTCCTCCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 22963 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | | || || ||| ||| Sbjct 22962 ATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAACC 22903 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || ||||| || || || || || |||||||| |||||| Sbjct 22902 TCCAGGGTGATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCATG 22855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| || |||||||| ||| ||| | || || | Sbjct 23291 CAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCAAGTGTGCGTCCATCCTCAA 23232 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || ||||||| || ||| || || || || | || ||||||||| || Sbjct 23231 GCTGCTTGCCAGCAAATATCAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAA 23172 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | || || ||||||||||| || || ||||| | Sbjct 23171 TCTTAGCCTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAGAGTGATGGTCTTCC 23112 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || ||||| |||||||| ||||| Sbjct 23111 CTGTAAGGGTCTTGACAAAGATCTGCAT 23084 >seq34423 Length=256361 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| |||||||| | | || | || || ||| |||||||| |||||||| ||| Sbjct 118720 GCCTCCTCTCAAACGGAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 118779 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| || || |||||||||||||| |||| || ||| ||||| || || Sbjct 118780 GAGGGTGCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 118839 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | |||||||||||| || | || |||| || | | | | |||| | ||||| Sbjct 118840 GATTCCCTCCTTGTCCTGAA-TCTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCA 118898 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| | ||| || ||||| || || || || || || |||||||||||| Sbjct 118899 CCTCGAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGCATG 118948 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| |||||||| | | || | || || ||| |||||||| |||||||||||| Sbjct 118948 GCCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 119007 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| || || |||||||||||||| |||| || ||| ||||| || || Sbjct 119008 GAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 119067 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| || || ||| || | | | |||| || |||||| Sbjct 119068 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCCAC 119127 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||| || || || || || || ||||| ||||| Sbjct 119128 CTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 119175 >seq34050 Length=239353 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| ||||| |||||| ||| | | || || || || Sbjct 43903 GTGCAGAGTGGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTTCCATCTTCAAGCTG 43962 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || ||||||| ||| || || || || | ||||||||||| |||||| Sbjct 43963 CTTTCCAGCAAAGATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCTTGAATTTT 44022 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | |||||||||| |||||| ||||||||||| Sbjct 44023 AGCCTTCACGTTATCAATTGTGTCGGAGCTTTCCACCTCCAGGGTAATAGTCTTGCCCGT 44082 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 44083 GAGGGTCTTCACAAAGATCTGCAT 44106 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||||| | ||||| || || ||| ||||||||| || ||||| ||| Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || ||||| || |||||||| |||| || ||| ||||| || || Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || ||| || ||| || | | | |||| | ||| ||| Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 44971 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| |||||||| || || || ||||||||||| ||||| Sbjct 44972 TCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 45018 >seq33260 Length=58559 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || ||||||||||| || ||| |||| || || || ||||||||||| Sbjct 34008 CTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 34067 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 34068 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 34127 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||||||||| | ||| |||||||| |||||||| |||||||| Sbjct 34128 GTCAATGGTGTCCGATGACTCCACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTCTTCAC 34187 Query 45325 AAAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 34188 GAAGATCTGCATTTT 34202 >seq33279 Length=59633 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || ||||| | | |||||||| || ||| |||||||| |||||||| || Sbjct 12230 GCCTCCCCTCAAACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGC 12289 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || || || || |||||||| || ||||||| || ||||| || || Sbjct 12290 CAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCTGGGGG 12349 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | |||| | ||| || Sbjct 12350 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAAC 12409 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || ||||||||||| || || ||||| ||||| |||||| Sbjct 12410 CTCCAGGGTGATTGTCTTGCCCGTGAGGGTTTTCACGAAGATCTGCATG 12458 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| ||||| | | |||||||| || ||| |||||||| |||||||| ||| Sbjct 12458 GCCACCCCTCAAACGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 12517 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || || || || |||||||| || ||||||| ||| ||||| || || Sbjct 12518 CAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 12577 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || |||||| | | | |||| | ||| || Sbjct 12578 AATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAAC 12637 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||| || || || || ||||| ||||| ||||| Sbjct 12638 CTCGAGAGTTATGGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCAT 12685 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| ||| || || |||| || Sbjct 12933 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCGTCTTCG 12992 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| || || ||||| || || | |||||||||||| Sbjct 12993 AGCTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 13052 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| || ||| ||||| | || || |||||| Sbjct 13053 ATCTTAGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTG 13112 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||||||||| ||||| Sbjct 13113 CCGGTTAGGGTTTTCACAAAGATCTGCAT 13141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| || | ||||| || || || |||||||||||||||||| || Sbjct 12003 CCACCCCTCAGCCTGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 12062 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || ||||| ||||| || | || ||| || || || || Sbjct 12063 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGA 12122 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||||| ||| || | | |||| | |||||| Sbjct 12123 ATTCCTTCTTTGTCCTGGATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCCACC 12182 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || |||||||| || || ||||| |||||||| |||||| Sbjct 12183 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 12230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394702520625400