Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq34240 102 6e-17 seq33784 93.3 3e-14 >seq34240 Length=378565 Score = 102 bits (112), Expect = 6e-17 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||||| | |||| ||||||||||||||| || || |||||||| || || Sbjct 153543 TCCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGC 153602 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | | ||||||||| |||||||| ||| | || ||||| || ||||| ||| Sbjct 153603 CAGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGGGG 153662 Query 18218 CACGCCTTCCTTATC--GGCAAT 18238 | ||||| || || |||||| Sbjct 153663 GATACCTTCTTTGTCCTGGCAAT 153685 >seq33784 Length=161669 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || |||||||| || ||||||||||||||||| || Sbjct 105655 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCA 105596 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | || ||||| ||| | || |||| || ||||| ||| Sbjct 105595 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 105536 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | |||| || || | ||| ||| ||| ||| Sbjct 105535 ATGCCTTCCTTGTCCTGAATCT-TTGCTTTAACATTATCAATAGTATCAGAACTCTCCAC 105477 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | || || ||||| || || ||||| || ||||| Sbjct 105476 CTCAAGAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || || | || |||||||| || || ||||| |||||||| || Sbjct 104654 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGCA 104595 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||| || | || ||||| ||| |||| || || || || || ||| Sbjct 104594 AGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 104535 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| || | |||||| | | || ||| ||||| | ||| Sbjct 104534 ATGCCTTCCTTATCTTGGATCT-TTGCTTTAACGTTGTCAATTGTGTCTGAGCTCTCCAC 104476 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 ||| | |||||| | || || || | ||| |||||||| || ||||| | ||| Sbjct 104475 TTCCAATGTGATGGTCTTCCCTGTGAGTGTCTTTACAAAGATCTGCATCTGTAA 104422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378986160063000