Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq33599 118 9e-22 seq34042 116 3e-21 seq34050 104 2e-17 seq33157 100 3e-16 seq34240 95.1 1e-14 seq31522 89.7 5e-13 seq33279 86.0 6e-12 seq34423 84.2 2e-11 seq33784 84.2 2e-11 seq33274 82.4 7e-11 seq33260 82.4 7e-11 >seq33599 Length=161954 Score = 118 bits (130), Expect = 9e-22 Identities = 297/448 (66%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 |||||||| ||||| | || ||||| ||||| ||||| || || ||| |||||| | Sbjct 157321 TTTATTAAGCACGTACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTT 157380 Query 57738 GTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC-TTTTACGGATTTCA 57796 | || | | || | || || || | |||||||| | ||| ||||| ||||| || Sbjct 157381 GCCGGACGGTTCATGAAGGAGGTCCAGATTGCGGAGGCGCG-TGCGTTTTATGGATTCCA 157439 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | ||||| || || | || || || ||||| || || | || || ||| | || Sbjct 157440 GATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAA 157499 Query 57857 GGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAA 57916 ||| || ||||| ||| ||||| ||||||| || || ||||| | | || Sbjct 157500 GGATTCTGAAGAGAAGGATAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAA 157559 Query 57917 GAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976 |||||| ||||| | || ||||| | || | || | ||||| ||| | | Sbjct 157560 GAAGGCTAAGTGGGCTCTCCGTTGGATTGATGGCTC---GGAATCATTCGCTGAGCGTTT 157616 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 | || ||||| || || || || ||||| || || || ||| || ||||| || Sbjct 157617 GTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTTGTGCTATATTCTG 157676 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | |||| || ||||| ||||||| || || | || || |||||||| ||||| || Sbjct 157677 GCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGA 157736 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGC 58124 ||||| | || |||||||||||| Sbjct 157737 TGAGGGCTTGCACTGCGATTTTGCGTGC 157764 >seq34042 Length=367129 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || || || ||||| ||||| || || ||||||||| |||| |||||| Sbjct 85948 CAAAAATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTTGAAT 85889 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 |||| |||| |||| | || || || ||| | ||||||||||||| | ||||| Sbjct 85888 CGTCGGACACCATCGACAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCGCCG 85830 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||||| || || ||||| ||||| ||| | || ||| || | ||| Sbjct 85829 GACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGAC 85770 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || || || ||||| || || || || Sbjct 85769 TACAACATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 85732 >seq34050 Length=239353 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || ||||| |||||| | || || ||| ||| Sbjct 44334 ATGCAGATTTTCGTGAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTGGAAAGCTCC 44275 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || || || ||||||||||||| | || || ||||| Sbjct 44274 GATACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAA 44215 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| | || || ||| | ||| || ||| Sbjct 44214 CAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTTGCCGACTACAAC 44155 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| |||| || || || ||||| || Sbjct 44154 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCAGGCTCAGGGGTGG 44108 >seq33157 Length=145522 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || ||||| ||| | || || || Sbjct 121897 CAAAGATGCAGATCTTCGTGAAAACCCTCACGGGGAAGACGATAACCCTGGAGGTGGAGT 121956 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | || || || ||| |||||||| || | || |||| Sbjct 121957 CCTCCGACACCATCGACAATGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCCG 122016 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| |||| ||| ||| || || | Sbjct 122017 ACCAGCAGCGGCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGGACCTTGGCGGACT 122076 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || ||||| || ||||| || ||||| ||| Sbjct 122077 ACAACATCCAGAAAGAGTCTACTCTCCACCTGGTGCTT 122114 >seq34240 Length=378565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||| ||||| | || || || |||||| | || || || ||||||||||||||||| Sbjct 153678 GGACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGA 153619 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | |||| || ||||| ||||| || || ||||| || ||||| ||||| | Sbjct 153618 AGATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACCTGGTTTT 153559 Query 31405 TAGACTGAGGGGCGG 31419 ||||| ||||| || Sbjct 153558 GAGACTTAGGGGAGG 153544 >seq31522 Length=43835 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || |||||||| || |||||||||||| | || |||||| || Sbjct 28946 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAAACGATCACCCTAGAAGTTGAAAGCTCA 29005 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| ||||| ||||| | || || || ||| Sbjct 29006 GATACAATTGATAACGTGAAGGCGAAAATTCAGGACAGAGAAGGAATTCCTCCAGATCAG 29065 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || |||||| | || || || | |||||| || Sbjct 29066 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 29125 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||||||||| || |||||||| || || || | || |||| Sbjct 29126 ATCCAGAAAGAATCGACGCTGCATCTGGTTCTGAGGTTGCGCGGTGGTA 29174 >seq33279 Length=59633 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || || || || || | || || ||| || Sbjct 12001 ATGCAGATATTTGTGAAGACCCTGACTGGAAAGACCATTACTTTGGAGGTGGAAAGCTCT 11942 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || |||||||| ||| | || || || ||| Sbjct 11941 GACACTATTGACAATGTGAAAGCCAAGATTCAAGACAAGGAGGGCATCCCACCAGATCAG 11882 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||||||||||| | |||| || ||||||||| Sbjct 11881 CAGAGGCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGAAGGACTCTGGCTGATTATAAC 11822 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || || || || || Sbjct 11821 ATCCAGAAAGAGTCCACCCTGCACCTTGTTCT 11790 >seq34423 Length=256361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || || || || ||||| || ||||| | || |||||| || Sbjct 118720 CATGCAAATCTTTGTCAAAACCCTAACCGGCAAGACCATCACTCTGGAGGTTGAAAGCTC 118661 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||||||| | || || || || Sbjct 118660 AGACACAATTGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCA 118601 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| ||||||||| | || ||| || | |||||| || Sbjct 118600 GCAGAGGCTTATCTTCGCCGGCAAACAGCTCGAGGACGGCCGTACCCTCGCCGATTACAA 118541 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || || || |||||||| |||| || || || Sbjct 118540 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCT 118502 >seq33784 Length=161669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || || || ||||| | || || || || Sbjct 105429 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTCTTGAGGTGGAGAGTTCT 105488 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| || ||| | ||||||||||||| | || || || || Sbjct 105489 GATACTATTGATAATGTTAAAGCAAAGATTCA-GGACAAGGAAGGCATTCCCCCAGATCA 105547 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| | || || | ||| | || || || Sbjct 105548 GCAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTTGCAGACTACAA 105607 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || || ||| |||| || | |||||||| || Sbjct 105608 CATTCAAAAGGAGTCAACACTCCATTTGGTGCTGCGTCTGAGGGGAGG 105655 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || ||||||||||| || || || |||||||| ||| | || Sbjct 105293 GGACAAGGAAGGCATTCCTCCAGACCAGCAGCGACTGATTTTTGCTGGCAAGCAGCTCGA 105352 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | ||| | || || ||||||||||| || || || || ||| | || || Sbjct 105353 TGATGGGAGGACACTTGCAGACTACAACATTCAAAAGGAGTCAACACTCCATTTAGTGCT 105412 Query 31405 TAGACTGAGGGGCGG 31419 |||||||||| || Sbjct 105413 GCGACTGAGGGGAGG 105427 >seq33274 Length=135285 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | || || || |||||| | || || || ||||| ||||||||||| Sbjct 48375 GGACAAGGAGGGCATCCCACCAGATCAGCAGAGGCTGATCTTTGCTGGTAAACAGTTGGA 48316 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | |||| || ||||||||||| || ||||| || || || || || || || Sbjct 48315 AGATGGAAGGACTCTGGCTGATTATAACATCCAGAAAGAGTCTACCCTGCACCTTGTTCT 48256 >seq33260 Length=58559 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || ||||| ||| | || || || | Sbjct 34202 AAAATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATAACCCTAGAGGTGGAGTCA 34143 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | || || || || ||||||||| ||| | ||||| ||| Sbjct 34142 TCGGACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGAC 34083 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || || ||| | || ||| || | || || Sbjct 34082 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCCTTGCAGACTAC 34023 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || || || || || || ||| | || | ||||| Sbjct 34022 AACATCCAAAAGGAGTCTACCCTCCACCTCGTCCTTCGCCTCCGCGGCGG 33973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445335121008000