Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq33488 134 2e-26 seq34321 87.8 2e-12 >seq33488 Length=63435 Score = 134 bits (148), Expect = 2e-26 Identities = 264/388 (68%), Gaps = 17/388 (4%) Strand=Plus/Plus Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 ||||| | | |||||| |||| |||||||| | ||||| || ||| || || | Sbjct 35333 GAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGGAACAGTCTAT 35392 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA- 33887 | || |||| ||||| | |||| || | ||| || || ||||| || || || Sbjct 35393 TCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATCTCGGATGGAG 35452 Query 33888 ---ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 ||||| || ||||| || || || |||||||| | |||||||| | ||| || Sbjct 35453 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGAGACCTGGACC 35512 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | || | ||||| ||||| || || || ||| ||| ||||| || Sbjct 35513 TCTTT-CATAG--GTTCT-CTAAA---------ACAATGCCGTCAGAGGCGGCAAAGAAA 35559 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 || | || || || || || | ||| ||||| || || || ||| ||| | ||||| Sbjct 35560 GCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTGAGG 35619 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 || | ||| | |||||||||||| | ||||| || || ||||| || || || ||||| Sbjct 35620 TCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 35679 Query 34125 TTCCAGATGTCATGATATTGGATTGGGA 34152 | ||| || ||| | ||||||||||||| Sbjct 35680 TCCCAAATCTCAGGGTATTGGATTGGGA 35707 >seq34321 Length=180555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || |||||||| | || |||||||| || || |||||| || ||| | | || Sbjct 112755 AGTGCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCGTTGAGACATCAAATG 112814 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || ||| || || || || ||||| | ||||| || || | || | ||| || Sbjct 112815 ATATGTCCTGATGGCAGATTCAATATCATTCTTGTGAATCCCAACAGAAACTCTCATCAA 112874 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || ||||| |||| ||| | | ||||| | ||| || |||| | Sbjct 112875 CATGTGTTGTGGCCTTTCCACAACTTTTCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 112934 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || ||||||||| || || || || Sbjct 112935 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 112982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629208251472000