Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq33488 122 1e-22 seq34321 89.7 7e-13 >seq33488 Length=63435 Score = 122 bits (134), Expect = 1e-22 Identities = 260/386 (67%), Gaps = 17/386 (4%) Strand=Plus/Plus Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404 ||||| | | |||||| |||| |||||||| | || || || ||| || || | Sbjct 35333 GAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGGAACAGTCTAT 35392 Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA- 36463 | || |||| ||||| | || | || | ||| || || ||||| || || || Sbjct 35393 TCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATCTCGGATGGAG 35452 Query 36464 ---ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 ||||| || ||||| ||||| || |||||||| | |||||||| | ||| || Sbjct 35453 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGAGACCTGGACC 35512 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| | || | ||||| ||||| || || |||||| ||| ||||| || Sbjct 35513 TCTTT-CATAG--GTTCT-CTAAA---------ACAATGCCGTCAGAGGCGGCAAAGAAA 35559 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 || | || || || || || | ||| |||| || || || ||| ||| | ||||| Sbjct 35560 GCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTGAGG 35619 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || | ||| | |||||||||||| | ||||| || || ||||| || || || ||||| Sbjct 35620 TCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 35679 Query 36701 TTCCAGATGTCATGATATTGAATTGG 36726 | ||| || ||| | ||||| ||||| Sbjct 35680 TCCCAAATCTCAGGGTATTGGATTGG 35705 >seq34321 Length=180555 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 |||||||| || | ||||| || |||| ||| | || | | |||||||| ||| ||| Sbjct 112340 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 112399 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 112400 TTGGATGTTCCATTTGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 112459 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||| || || || |||| || || |||| |||||||| || Sbjct 112460 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 112519 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| || |||||||| ||||| | || || |||||| Sbjct 112520 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 112561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657536017816000