Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq33784 105 7e-18 seq33279 98.7 1e-15 seq33714 96.9 3e-15 seq33157 91.5 1e-13 seq33274 89.7 5e-13 seq34423 86.0 6e-12 >seq33784 Length=161669 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || || || | || ||||| ||||||||||| || || | ||| ||| Sbjct 105644 ACGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCC 105585 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || |||||||| || |||||| | ||||| || |||||||| || || |||||||| || Sbjct 105584 ATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTT 105525 Query 139669 GTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | |||| |||| | | || | || || | ||||||||||| || | Sbjct 105524 GTC-CTGAATCTTTGCTTTAACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTGA 105466 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || || ||||| Sbjct 105465 TGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||||| || | || ||||| ||||||||||| || || | ||| ||| Sbjct 105415 CGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCA 105356 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || |||||| | ||||| || ||||| || ||||| |||||||| ||| Sbjct 105355 TCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 105296 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| |||| | | || | ||| || | | |||||| || | || | Sbjct 105295 TC-CTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTGAT 105237 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || || || || || || || ||||| Sbjct 105236 GGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 >seq33279 Length=59633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| |||||||| || |||||||| ||||| | |||| || || Sbjct 12021 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGGCCATCCTCC 12080 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||| || | |||||||| || || || ||||||||||| | Sbjct 12081 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 12140 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| || | | || | |||||||| | |||||||| | ||| | |||||| Sbjct 12141 ATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTG 12200 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || || || ||||| Sbjct 12201 CCGGTGAGGGTCTTGACAAAGATCTGCAT 12229 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || |||||||| || ||||||||||| | Sbjct 11775 CCACCACGGAGACGGAGAACAAGGTGCAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 11834 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||| || |||||| ||||||| | |||||||| || || Sbjct 11835 AGAGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGG 11894 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | ||| | | || | ||||| | | ||||| Sbjct 11895 ATGCCCTCCTTGTC-TTGAATCTTGGCTTTCACATTGTCAATAGTGTCAGAGCTTTCCAC 11953 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||| || |||| || || || ||||| |||||| Sbjct 11954 CTCCAAAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAATATCTGCATA 12002 >seq33714 Length=161502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || || || | ||||||||| || |||||||| || || | ||| ||| Sbjct 23073 AATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCTC 23014 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || ||||||||||| ||| |||||| ||| || || || ||||| |||||||| Sbjct 23013 CCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGAATGCCTTCC 22954 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| ||| || | | || | || || | ||| ||||| | ||| Sbjct 22953 TTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAGGGTG 22894 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || | |||||| || || || ||||| Sbjct 22893 ATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCAT 22856 >seq33157 Length=145522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | ||||||||||| || ||||| || || Sbjct 122129 GCCACCGCGGAGACGAAGCACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCGC 122070 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || |||| || || ||||| ||||| || Sbjct 122069 CAAGGTCCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCGGGTGG 122010 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | || | | || | ||||||| || ||||| Sbjct 122009 GATTCCCTCCTTGTC-TTGAATTTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCA 121951 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 121950 CCTCCAGGGTTATCGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCAT 121902 >seq33274 Length=135285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | ||||||||||| || ||||||||||| | Sbjct 48241 CCACCACGGAGACGGAGAACAAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGCC 48300 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||||||||||||| ||||||| | |||||||| || || Sbjct 48301 AGAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAGCCTCTGCTGATCTGGTGGG 48360 Query 139658 ATGCCTTCTTTGTC 139671 ||||| || ||||| Sbjct 48361 ATGCCCTCCTTGTC 48374 >seq34423 Length=256361 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | || | || | || || || || || ||||| |||||| Sbjct 118720 GCCTCCTCTCAAACGGAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 118779 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| ||||||||||| || || ||||||| | ||||| || || || Sbjct 118780 GAGGGTGCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 118839 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | ||| | | || | ||||||| | ||||| Sbjct 118840 GATTCCCTCCTTGTC-CTGAATCTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCA 118898 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 118899 CCTCGAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 118947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || ||||| |||||| | || | ||| ||| Sbjct 118511 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCGTCCTCG 118570 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| || || |||| || | |||||||| || || || ||||| ||||| | Sbjct 118571 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 118630 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | |||||| | | || ||||| | || | |||||| Sbjct 118631 ATCTTGGCCTTGACGTTATCAATTGTGTCTGAGCTTTCAACCTCCAGAGTGATGGTCTTG 118690 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 118691 CCGGTTAGGGTTTTGACAAAGATTTGCAT 118719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495584058080000