Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq33488 134 2e-26 seq34321 95.1 2e-14 >seq33488 Length=63435 Score = 134 bits (148), Expect = 2e-26 Identities = 264/388 (68%), Gaps = 17/388 (4%) Strand=Plus/Plus Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 ||||| | | |||||| |||| |||||||| | ||||| || ||| || || | Sbjct 35333 GAGCCGAGTTGGCCTTGTTTTCCACACAAGGTAGGGTTTCAATTGCACGGAACAGTCTAT 35392 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA- 50265 | || |||| ||||| | |||| || | ||| || || ||||| || || || Sbjct 35393 TCTTCTCATCGGAGTCTTTGATGTAAGACTCTAGCAAGAGGCTGTACATCTCGGATGGAG 35452 Query 50266 ---ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 ||||| || ||||| || || || |||||||| | |||||||| | ||| || Sbjct 35453 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGAGACCTGGACC 35512 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| | || | |||| ||||| || || |||||| ||| ||||| || Sbjct 35513 TCTTT-CATAG--GTTCT-CTAAA---------ACAATGCCGTCAGAGGCGGCAAAGAAA 35559 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442 || | || || || || || ||||| |||| ||| || || ||| ||| | ||||| Sbjct 35560 GCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTGAGG 35619 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 || | ||| | ||| |||||||| | ||||| || || ||||| || || || ||||| Sbjct 35620 TCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 35679 Query 50503 TTCCAGATGTCATGATATTGGATTGGGA 50530 | ||| || ||| | ||||||||||||| Sbjct 35680 TCCCAAATCTCAGGGTATTGGATTGGGA 35707 >seq34321 Length=180555 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 |||||||| || | ||||| || |||| ||| | || | | |||||||| ||| ||| Sbjct 112340 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 112399 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 112400 TTGGATGTTCCATTTGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 112459 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || || |||| || || |||| |||||||| || Sbjct 112460 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 112519 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | || || |||||| Sbjct 112520 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 112561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || |||||||| | || |||||||| || || |||||| || ||||| | || Sbjct 112755 AGTGCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCGTTGAGACATCAAATG 112814 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || ||| || || ||||| ||||| | ||||| || || | || | ||| || Sbjct 112815 ATATGTCCTGATGGCAGATTCAATATCATTCTTGTGAATCCCAACAGAAACTCTCATCAA 112874 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || || ||||| || | || | | ||||| | |||||| |||| | Sbjct 112875 CATGTGTTGTGGCCTTTCCACAACTTTTCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 112934 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| ||||||||||| | || ||||||||| || || || || Sbjct 112935 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 112982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717573874936000